| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0192 |
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| Symbol | |
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| ID | 4922153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 197601 |
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| End bp | 198851 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640161711 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001092323 |
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| Protein GI | 127511126 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4235] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000308025 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00684666 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCACAC TCTGGATTTT TATTGCGCTT TTTGTATTAG TCAGCCTTGT GCTGATTTGG
TTTCCACACT TCCGCCAGCA AAAGATGCTG CAGGCCGAAG AAGCCGGTGT GCGTAAGGCC
ACCAACCTCG AACTTTTTAA CAATCGCCTA GCGACCCTAG AGAAGGAACT TGAGGATGAG
CTGCTGGATC AAGATGAGTT TAACGCGCTA AAGAAAGAAC TCGAGATCAG CCTGCTTCAG
GACATGAAGC AAGGTGAAGA TGAATCTCTG GTCGGTCAGA TCAAGCCTAA GAGCCTACTC
TGGCCAACAT TGATGTCTGT GGTGGTATTA GGTGTTTCTG GCTACTTCTA TGCCAACCTA
GGTGCGTATG CCAACCTAGA CAAGGCGGTT CCCGACAATC CACACGCAGG AATGGATGCC
GCCCAGATCA TGACCCAGCG CATTCAGATG ATGGAATCAC AGCTGCAAGC CGAGCCGGAA
AACAGCCAGC TGCTGTTTAG CCTTGGCCAT GCCTACATCA GCGCCAACCG TTATGATGAT
GCGGTAAAAG CATTCGACAA GGCGATGGAG CTAGTGGGTA CCCACGCCGA GCTGCTTGGT
CCTAAGGCGA CAGCCATGTA CTACAAGGCC AACCAAAGAA TCACCCCTGC GGTACAGGCC
ATTATCGACC AATCATTGGC ATTAGATCCT GAAGATCCTT CAACCCTACT GCTTGTCGGT
ATGGATGCCT TCTTCAGTGC TCAATATAAG AAGGCGATCG ATGCCTGGCA GATCATTCTC
GATAGCGACA GAAGCGATGT GGACCGTAGC GCCATCATCA ATGCCATCGA GAGCGCCAAG
ATGAGAATGC AAGCCGAAAC TGGCGAGATG CCTAACGACG CGACTCATCA GCAGGCCAAG
GCCACTACCG GTAAGACGGT AACCATAGAT GTGTCAATCG CACCCGAGCT GCTAGAGAAT
GTCAGCGGTA GCGATATGCT GTTTATCTTT GCCCGCAACA CCCAAGGCCC TAAGGTGCCG
CTAGCGGCGA CTAAGGTATC GGCGAAATCT CTGCCTGTCT CTATCACCTT AGATGACAGC
ACTGGCATGG GCGGCGATAT CAAGCTGAGC GACGCCAAAC AGGTTGAAGT GATCGCCGTG
CTCTCTAAGC ATGGTTCGGT TAAGGCGCAG CCTGGCGATC TACAGGGCCG TCTGGAAACC
ATGGACGTGG GGTCAACCGC TAAGCTAGTG ATTGATACTC TGGTTCAGTA A
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| Protein sequence | MTTLWIFIAL FVLVSLVLIW FPHFRQQKML QAEEAGVRKA TNLELFNNRL ATLEKELEDE
LLDQDEFNAL KKELEISLLQ DMKQGEDESL VGQIKPKSLL WPTLMSVVVL GVSGYFYANL
GAYANLDKAV PDNPHAGMDA AQIMTQRIQM MESQLQAEPE NSQLLFSLGH AYISANRYDD
AVKAFDKAME LVGTHAELLG PKATAMYYKA NQRITPAVQA IIDQSLALDP EDPSTLLLVG
MDAFFSAQYK KAIDAWQIIL DSDRSDVDRS AIINAIESAK MRMQAETGEM PNDATHQQAK
ATTGKTVTID VSIAPELLEN VSGSDMLFIF ARNTQGPKVP LAATKVSAKS LPVSITLDDS
TGMGGDIKLS DAKQVEVIAV LSKHGSVKAQ PGDLQGRLET MDVGSTAKLV IDTLVQ
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