| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0174 |
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| Symbol | rplR |
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| ID | 4920907 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 186873 |
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| End bp | 187223 |
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| Gene Length | 351 bp |
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| Protein Length | 116 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640161693 |
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| Product | 50S ribosomal protein L18 |
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| Protein accession | YP_001092305 |
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| Protein GI | 127511108 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0256] Ribosomal protein L18 |
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| TIGRFAM ID | [TIGR00060] ribosomal protein L18, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00002597 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000543254 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGGATAAGA AAACATCTCG CTTACGCCGC GCGACTCGCG CCCGTAAGAA GATCCAAGAG
CTGGGCGTTA ACCGTCTGGT TGTACATCGT ACACCACGTC ACACATACGC ACAGGTTATT
GATGCCAACG CGCAAGTTGT GGCGGCAGCT TCTACTGCTG AAAAAGCGGT ATCAGAGCAG
CTTAAATACA CAGGTAACGT AGAAGCGGCT AAAGCAGTAG GTAAGACTAT TGCTGAGCGT
GCTATCGAGA AAGGCGTAAC TGTAGTTGCA TTCGATCGTT CCGGCTTTAA GTATCACGGA
CGCGTAGCTG CCCTGGCAGA CGCTGCTCGT GAAGCTGGCC TACAGTTCTA A
|
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| Protein sequence | MDKKTSRLRR ATRARKKIQE LGVNRLVVHR TPRHTYAQVI DANAQVVAAA STAEKAVSEQ
LKYTGNVEAA KAVGKTIAER AIEKGVTVVA FDRSGFKYHG RVAALADAAR EAGLQF
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