| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0173 |
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| Symbol | rplF |
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| ID | 4920905 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 186332 |
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| End bp | 186862 |
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| Gene Length | 531 bp |
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| Protein Length | 176 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640161692 |
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| Product | 50S ribosomal protein L6 |
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| Protein accession | YP_001092304 |
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| Protein GI | 127511107 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0097] Ribosomal protein L6P/L9E |
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| TIGRFAM ID | [TIGR03654] ribosomal protein L6, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000111848 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000538106 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGTCTCGTG TCGCAAAAGC ACCAGTCGCT ATCCCTGCAG GCGTAGAAGT GACTTTAAAC
GAACAAACTA TCACCGTAAA AGGTGCTAAA GGTAGTTTGA CTCGAGTAAT CAACGCTGAC
GTTTCTGTTG TTGTTGAAAA CAACGAAATC AAGTGTTCAC CAGCTGAAGG CGTAACTAGC
GCTGCACAAG CTGGTACAGC TCGAGCACTA ATCAACAACA TGGTTGTTGG TGTTAACGAA
GGTTTCGAAA GAAAGCTGAC TCTAGTTGGT GTTGGTTACC GTGCAAAAAT TGCTGGTAAC
GGTATCGACC TGACTCTAGG TTTCTCACAC CCTCTAGTAC ACCAGCTTCC TGACGGCGTA
ACTGCTGAGT GTCCATCACA AACTGAAATC GTACTTAAGA GTACTGATAA GCAGCTTGTT
GGTCAGGTTG CAGCAGAAAT TCGTGGCTAC CGTCCACCAG AGCCTTACAA AGGCAAGGGT
GTTCGCTATG CTGATGAACA AGTACGCCGT AAAGAGGCTA AGAAGAAGTA G
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| Protein sequence | MSRVAKAPVA IPAGVEVTLN EQTITVKGAK GSLTRVINAD VSVVVENNEI KCSPAEGVTS
AAQAGTARAL INNMVVGVNE GFERKLTLVG VGYRAKIAGN GIDLTLGFSH PLVHQLPDGV
TAECPSQTEI VLKSTDKQLV GQVAAEIRGY RPPEPYKGKG VRYADEQVRR KEAKKK
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