Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0167 |
Symbol | rpsQ |
ID | 4920870 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 183915 |
End bp | 184163 |
Gene Length | 249 bp |
Protein Length | 82 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640161686 |
Product | 30S ribosomal protein S17 |
Protein accession | YP_001092298 |
Protein GI | 127511101 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0186] Ribosomal protein S17 |
TIGRFAM ID | [TIGR03635] 30S ribosomal protein S17 |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000350413 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000281031 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGACTGATA AAATCCGTAC TTTGCAAGGT CGTGTACTTA GCAACAAGAT GGACAAGTCT ATCACTGTAG CTATTGAGCG TAAGGTTAAG CATCCTCTAT ACGGGAAGTT TATCAAGCGT ACTACTAAGA TCCATGCACA TGACGAAACA AATCAGTGTA ATGCTGGCGA TATCGTGACT ATTCGCGAAT GCCGTCCGCT GTCTAAGACT AAGTCTTGGA CTCTGGTTGA AGTAGTAACA AAAGCCTAA
|
Protein sequence | MTDKIRTLQG RVLSNKMDKS ITVAIERKVK HPLYGKFIKR TTKIHAHDET NQCNAGDIVT IRECRPLSKT KSWTLVEVVT KA
|
| |