| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0164 |
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| Symbol | rpsC |
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| ID | 4920763 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 182613 |
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| End bp | 183302 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640161683 |
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| Product | 30S ribosomal protein S3 |
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| Protein accession | YP_001092295 |
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| Protein GI | 127511098 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0092] Ribosomal protein S3 |
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| TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000022982 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000484078 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGGGACAGA AAGTACATCC TAATGGTATC CGTCTGGGTA TCACTAAGCC TTGGATCTCG
ACTTGGTACG CTGATAAATC AGATTATGCC AACAATCTAA GCAGCGACTG GGAAGTGCGT
AAGTTTCTAG AAAAGAAACT TAAGCAAGCC TCAGTCTCTA AGATTGTTAT CGAGCGTCCA
GCTAAGAGTG TTCGCGTTAC CATTCACACT GCCCGTCCAG GTGTTGTGAT TGGTAAGAAA
GGCGAAGATG TTGAAAAGCT GCGCAACGAA GTTGCTAAGT TGACTGGTAT TCCAGCTCAA
ATCAACATCG CTGAAATCCG TAAGCCAGAG CTAGATGCGA AGCTGGTTGC CGAAGGCATC
GCTTCTCAGC TAGAGCGTCG TGTAATGTTC CGTCGCGCTA TGAAGCGTGC GGTACAGAAC
GCTATGCGTC TAGGTGCTAA GGGTATCAAA GTTGAAGTGA GCGGCCGTTT AGGCGGTGCT
GAGATTGCGC GTTCAGAGTG GTATCGTGAA GGTCGTGTGC CTCTACATAC ACTGCGTGCT
GATATCGATT ATTCTACTGC AGAAAGTCAC ACTCAATACG GTGTGATCGG CGTTAAAGTT
TGGGTCTTCA AAGGTGAAGT TCTAGACGGC GTTGTTCCTG CGCTAGAAGA GCCGAAACAG
CAGCCGAAGC GTAAGCCTCG CGGTAAATAG
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| Protein sequence | MGQKVHPNGI RLGITKPWIS TWYADKSDYA NNLSSDWEVR KFLEKKLKQA SVSKIVIERP
AKSVRVTIHT ARPGVVIGKK GEDVEKLRNE VAKLTGIPAQ INIAEIRKPE LDAKLVAEGI
ASQLERRVMF RRAMKRAVQN AMRLGAKGIK VEVSGRLGGA EIARSEWYRE GRVPLHTLRA
DIDYSTAESH TQYGVIGVKV WVFKGEVLDG VVPALEEPKQ QPKRKPRGK
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