| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0161 |
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| Symbol | rplB |
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| ID | 4920665 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 181138 |
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| End bp | 181965 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640161680 |
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| Product | 50S ribosomal protein L2 |
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| Protein accession | YP_001092292 |
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| Protein GI | 127511095 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0090] Ribosomal protein L2 |
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| TIGRFAM ID | [TIGR01171] ribosomal protein L2, bacterial/organellar |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000128131 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000051786 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCAGTTA TTAAGTGTAA GCCAACCTCT GCTGGTCGTC GCCACGTTGT TAAAGTGGTG
AACAGCGATC TGCATAAGGG TAAACCCTTT GCTGGCCTGT TGGCGAAAAA AGCTAAGAGC
GGTGGCCGTA ACAACACCGG TCGTATTACT GTTCGTCACG TAGGTGGTGG ACACAAGCAG
CACTACCGTA TTGTTGACTT CAAGCGCAAC AAAGACGGTA TCCCTGCTAA AGTAGAGCGT
TTGGAATATG ATCCAAACCG TACCGCTAAC ATCGCACTTG TTTTGTATGC TGATGGTGAG
CGTCGTTATA TCCTTGCTGC TAAAGGCATG CAAGCTGGTG ATCAAATCCA GTCTGGTATC
GATGCTGAAA TCAAAGCGGG TAACGCTTTG CCACTACGCA ACATCCCAGT AGGTAGCGTT
GTTCACGCAG TTGAAATGAA GCCTGGTAAA GGTGCTCAGA TCGCTCGTTC AGCAGGTACC
TATGTACAAG TTGTAGCTCG TGACGGCGCA TACGCCACTC TACGTCTTCG CTCTGGCGAA
ATGCGTAAAG TGCCAGTAGA TTGCCGCGCG ACATTAGGTG AAGTTGGTAA TGCCGAGCAT
ATGCTACGCC AGTTGGGTAA AGCAGGTGCT AAGCGCTGGA GAGGCGTACG CCCAACAGTT
CGTGGTGTTG CAATGAACCC AGTAGACCAT CCACATGGTG GTGGTGAAGG CCGTACATCT
GGTGGCCGTC ACCCAGTGAC TCCATGGGGT GTCCCAACTA AGGGTTATAA GACCCGTAGT
AACAAACGCA CCGACAAGTA CATCGTACGT CGTCGTAACA AAAAGTAA
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| Protein sequence | MAVIKCKPTS AGRRHVVKVV NSDLHKGKPF AGLLAKKAKS GGRNNTGRIT VRHVGGGHKQ
HYRIVDFKRN KDGIPAKVER LEYDPNRTAN IALVLYADGE RRYILAAKGM QAGDQIQSGI
DAEIKAGNAL PLRNIPVGSV VHAVEMKPGK GAQIARSAGT YVQVVARDGA YATLRLRSGE
MRKVPVDCRA TLGEVGNAEH MLRQLGKAGA KRWRGVRPTV RGVAMNPVDH PHGGGEGRTS
GGRHPVTPWG VPTKGYKTRS NKRTDKYIVR RRNKK
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