Gene Shew_0158 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0158 
SymbolrplC 
ID4920628 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp179565 
End bp180203 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content47% 
IMG OID640161677 
Product50S ribosomal protein L3 
Protein accessionYP_001092289 
Protein GI127511092 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0087] Ribosomal protein L3 
TIGRFAM ID[TIGR03625] 50S ribosomal protein L3, bacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000206645 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000470561 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGCTATCG GTCTTATCGG TCGTAAAGTA GGTATGACTC GCATCTTCAC TGAAGATGGT 
GCGTCAATAC CTGTAACAGT AATTGAAATT GCAGCTAACC GCGTTGCTCA AGTGAAAACT
TTAGAAACTG ACGGTTACCG TGCACTTCAA ATTACTACTG GTACCAAAAA AGCTAATCGC
ATCACTAAAC CAGAAGCAGG TCACTTTGCT AAGGCTGGCG TTGAAGCTGG TCGTGGTTTG
TGGGAAATGC GTCTGGCTGA CGGTGAAGGC GAAGGCATCG AAGTAGGTGC TGAGCTTAAT
GTTGATATCT TCGCTGACGT AGCGAAAGTT GATGTTACTG GTCAATCAAA GGGTAAAGGT
TTCCAAGGCG GTATCAAGCG TTGGAACTTC CGTACTCAAG ATGCAACACA CGGTAACTCA
TTGGCACATA GAGCTAACGG TTCTATCGGT CAAAACCAAA CACCTGGTCG CGTTTTCAAA
GGTAAGAAAA TGTCTGGCCA CATGGGTGCA GAGCGTGTTA CTACCCAGAA TCTAGACGTT
GTACGTGTAG ACGCTGAGCG TAACCTGCTA TTGGTTAAGG GTGCAGTTCC AGGCGCTACT
AATGGCGACC TGATCATCAA GCCTGCCGTT AAAGCTTAG
 
Protein sequence
MAIGLIGRKV GMTRIFTEDG ASIPVTVIEI AANRVAQVKT LETDGYRALQ ITTGTKKANR 
ITKPEAGHFA KAGVEAGRGL WEMRLADGEG EGIEVGAELN VDIFADVAKV DVTGQSKGKG
FQGGIKRWNF RTQDATHGNS LAHRANGSIG QNQTPGRVFK GKKMSGHMGA ERVTTQNLDV
VRVDAERNLL LVKGAVPGAT NGDLIIKPAV KA