Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0158 |
Symbol | rplC |
ID | 4920628 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 179565 |
End bp | 180203 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640161677 |
Product | 50S ribosomal protein L3 |
Protein accession | YP_001092289 |
Protein GI | 127511092 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0087] Ribosomal protein L3 |
TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000206645 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.0000470561 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGCTATCG GTCTTATCGG TCGTAAAGTA GGTATGACTC GCATCTTCAC TGAAGATGGT GCGTCAATAC CTGTAACAGT AATTGAAATT GCAGCTAACC GCGTTGCTCA AGTGAAAACT TTAGAAACTG ACGGTTACCG TGCACTTCAA ATTACTACTG GTACCAAAAA AGCTAATCGC ATCACTAAAC CAGAAGCAGG TCACTTTGCT AAGGCTGGCG TTGAAGCTGG TCGTGGTTTG TGGGAAATGC GTCTGGCTGA CGGTGAAGGC GAAGGCATCG AAGTAGGTGC TGAGCTTAAT GTTGATATCT TCGCTGACGT AGCGAAAGTT GATGTTACTG GTCAATCAAA GGGTAAAGGT TTCCAAGGCG GTATCAAGCG TTGGAACTTC CGTACTCAAG ATGCAACACA CGGTAACTCA TTGGCACATA GAGCTAACGG TTCTATCGGT CAAAACCAAA CACCTGGTCG CGTTTTCAAA GGTAAGAAAA TGTCTGGCCA CATGGGTGCA GAGCGTGTTA CTACCCAGAA TCTAGACGTT GTACGTGTAG ACGCTGAGCG TAACCTGCTA TTGGTTAAGG GTGCAGTTCC AGGCGCTACT AATGGCGACC TGATCATCAA GCCTGCCGTT AAAGCTTAG
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Protein sequence | MAIGLIGRKV GMTRIFTEDG ASIPVTVIEI AANRVAQVKT LETDGYRALQ ITTGTKKANR ITKPEAGHFA KAGVEAGRGL WEMRLADGEG EGIEVGAELN VDIFADVAKV DVTGQSKGKG FQGGIKRWNF RTQDATHGNS LAHRANGSIG QNQTPGRVFK GKKMSGHMGA ERVTTQNLDV VRVDAERNLL LVKGAVPGAT NGDLIIKPAV KA
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