| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0153 |
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| Symbol | rpsL |
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| ID | 4923607 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 174503 |
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| End bp | 174877 |
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| Gene Length | 375 bp |
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| Protein Length | 124 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640161672 |
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| Product | 30S ribosomal protein S12 |
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| Protein accession | YP_001092284 |
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| Protein GI | 127511087 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0048] Ribosomal protein S12 |
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| TIGRFAM ID | [TIGR00981] ribosomal protein S12, bacterial/organelle |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00144977 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000385897 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGGCAACTG TAAACCAGTT GGTACGTAAG CCTCGCTCGC CAAAAGTCAT CAAGACTAAC
GTGCCTGCGT TGAATGCGTG TCCACAAAAG CGTGGTGTTT GTACTCGCGT ATACACAACC
ACACCTAAAA AACCTAACTC TGCACTACGT AAAGTAGCTC GTGTGCGTCT AACTAACGGT
TTCGAAGTTA CTTCGTACAT CGGCGGTGAA GGCCACAACC TGCAGGAACA CAGCGTGATT
CTAATCCGTG GTGGTCGTGT TAAAGACTTA CCAGGTGTTC GTTATCACAC TGTTCGTGGC
GCATTAGACT GTGCTGGTGT TAGTGAGCGT CGTCAAGGAC GTTCTAAGTA CGGAGCTAAG
CGTCCTAAGT CTTAA
|
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| Protein sequence | MATVNQLVRK PRSPKVIKTN VPALNACPQK RGVCTRVYTT TPKKPNSALR KVARVRLTNG
FEVTSYIGGE GHNLQEHSVI LIRGGRVKDL PGVRYHTVRG ALDCAGVSER RQGRSKYGAK
RPKS
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