| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0142 |
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| Symbol | |
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| ID | 4921480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 158231 |
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| End bp | 159190 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640161658 |
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| Product | biotin--protein ligase |
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| Protein accession | YP_001092273 |
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| Protein GI | 127511076 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0340] Biotin-(acetyl-CoA carboxylase) ligase |
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| TIGRFAM ID | [TIGR00121] birA, biotin-[acetyl-CoA-carboxylase] ligase region
[TIGR00122] BirA biotin operon repressor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.330287 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0344662 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATGATC AGTGGGCCCG TCGCCGGGAT ATTATTCGTT TGTTGAGTCA GGGACACTTT
GTGTCGGGCG AGGCGCTGGC CAGTGAGCTC GGCATCTCTC GGGCGGCAGT CAGCAAGCAG
GTAGCCAACT TAGAAGAGTT TGGCGTCGAC ATCTATAGCG TTAAAGGTAA GGGCTATAAG
CTAGCCACAC CTATCTCGCT TATCGATGAG GCTAAGCTTA AGACTGCTAT CAAGAATCGC
TGCTTCTATT TTAATGAGAT CAACAGCACC AACGGATTCC TACTCGAGCA TGTGAAGGAT
CTCAGCAGCG GCGATATCTG TGTGGCCGAG TATCAGTCTG CCGGGCGTGG ACGCCGCGGG
CGTCAATGGG TATCTCCCTA TGGATGCCAC CTCTATACCT CCTTCTATTG GCAGTTTTCT
CAGGGAATGG CCCAGGCGAT GGGGCTTAGC CTGGTGGTTG GCTGCTCTTT GGTAACAGTG
CTGCGTTCAC TGGGAGTCGA TGGCATAGGG GTTAAGTGGC CGAACGACAT CTACCTCAAC
CATAAGAAGC TTGCGGGGAT ACTGATCGAG ATGAGTGGCC AAGCCGACAG TGTTTGTGAC
CTAGTGATAG GTATAGGCAT CAACCTCTCT ATGTCGCCGG CGCAAGCGGA TAAGATAGAT
CAGCCCTGGA GCGATCTGTC TGAGTTGACG CAGTTGCCGG ACAAAACGGA GCTGATGATA
GCGCTGCAGC AGCAGTTGGT GACAGATCTG GAGCTGTTTC AGCGTCAAGG TCTGAAGGCA
TTCCAGTCAA GATGGCGCGA GGCCGATCTG TTCGACGGTG AGCCTATCAA GCTGTTGATG
GGCGAGAATA GCGTCGAGGG GATCTGCTGC GGTATCGACG AGCAGGGGGC AATATTGCTT
AAGACGGAGG AGGGCACTAA GGCCTTCGTC GGCGGTGAGA TCTCCATGCG TCCTGCATAA
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| Protein sequence | MHDQWARRRD IIRLLSQGHF VSGEALASEL GISRAAVSKQ VANLEEFGVD IYSVKGKGYK
LATPISLIDE AKLKTAIKNR CFYFNEINST NGFLLEHVKD LSSGDICVAE YQSAGRGRRG
RQWVSPYGCH LYTSFYWQFS QGMAQAMGLS LVVGCSLVTV LRSLGVDGIG VKWPNDIYLN
HKKLAGILIE MSGQADSVCD LVIGIGINLS MSPAQADKID QPWSDLSELT QLPDKTELMI
ALQQQLVTDL ELFQRQGLKA FQSRWREADL FDGEPIKLLM GENSVEGICC GIDEQGAILL
KTEEGTKAFV GGEISMRPA
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