Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0138 |
Symbol | |
ID | 4920446 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 147823 |
End bp | 148920 |
Gene Length | 1098 bp |
Protein Length | 365 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640161649 |
Product | tRNA (uracil-5-)-methyltransferase |
Protein accession | YP_001092269 |
Protein GI | 127511072 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR02143] tRNA (uracil-5-)-methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0022403 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0763736 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGTAG ACGCAATGGA TCCCCAGCAA TATGACGCAC AACTCGATGT GAAACGTCAG AAACTAGCCC AGCTATTTGT CGACTTCGAG ACACCCGAAC TGGAAGTGTT TGCCTCACAG AAGGCCCACT ACCGCATGCG CGCCGAGTTC CGCGTCTGGC ATGAGGGTGA AGATCTCTAC TATTACATGT TCGATAAGGC GCAGAACCAG AAGATACGCT GCGAGCAGTT CTTACCGGCA AGTCAGTTGA TCAACGACAT GATGCCAGAG CTGATGGCGG CGCTGCGTCC TAACCCGGTC CTGAGACACA AGCTGTTCCA GGTTGATTTT CTCTCTACTC TCAGCGGAGA GATCTTAGTG TCACTCCTGT ACCACAAGCA GCTCGATGCT CAGTGGCAAG AGGAGGCTCA GGCGCTGAAA GAGGCACTGT CGAGCAAATT TAAGGTGGAC ATCATAGGCC GCGCTCGTAA GCAGAAGCTG GTGATGGATC GCGACTTCGT TATCGAATCC CTACCCGTCA ACGGCAAACA GCTTACCTAC AAGCAGGTCG AAAACAGCTT TACCCAGCCA AACGGCGAGG TGGCGATCAA GATGCTCGAG TGGGCCATCG ACATCACCCG TGATAGCAGT GGTGACCTGT TGGAGCTCTA CTGCGGTAAC GGTAATTTCT CTATCGCCCT GGCACAGAAC TTCAACCGCG TGCTCGCTAC CGAACTGGCC AAGCCATCTG TGGACTCGGC CCAGTACAAC ATAGAGGCCA ACCAGATAGA TAATCTGCAG ATCATCCGTA TGTCGGCGGA AGACTTTACC GATGCGCTGG CCAAGAAGCG CAGCTTCAGA CGCTTAGAAG GGGTGGATCT GGACAGCTAT GACTGCAACA CCATCTTCGT CGACCCGCCA AGAGCAGGCT TAGATGATAA TACCCTGTCT ATGGTGCAGG GCTACGAGCG TATTCTCTAT ATCTCTTGTA ATCCCAATAC CCTGCTGGAC AACCTCAAGG TGTTGGACAA AACCCATAAG ATCACCCGCT TCGCGCTGTT TGACCAGTTC CCTTATACAG ATCATATGGA ATCTGGCGTC CTGCTGGAAC GTCGTTAA
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Protein sequence | MNVDAMDPQQ YDAQLDVKRQ KLAQLFVDFE TPELEVFASQ KAHYRMRAEF RVWHEGEDLY YYMFDKAQNQ KIRCEQFLPA SQLINDMMPE LMAALRPNPV LRHKLFQVDF LSTLSGEILV SLLYHKQLDA QWQEEAQALK EALSSKFKVD IIGRARKQKL VMDRDFVIES LPVNGKQLTY KQVENSFTQP NGEVAIKMLE WAIDITRDSS GDLLELYCGN GNFSIALAQN FNRVLATELA KPSVDSAQYN IEANQIDNLQ IIRMSAEDFT DALAKKRSFR RLEGVDLDSY DCNTIFVDPP RAGLDDNTLS MVQGYERILY ISCNPNTLLD NLKVLDKTHK ITRFALFDQF PYTDHMESGV LLERR
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