| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0125 |
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| Symbol | |
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| ID | 4921195 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 135053 |
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| End bp | 136618 |
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| Gene Length | 1566 bp |
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| Protein Length | 521 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640161636 |
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| Product | cytochrome c oxidase, subunit II |
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| Protein accession | YP_001092256 |
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| Protein GI | 127511059 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1622] Heme/copper-type cytochrome/quinol oxidases, subunit 2
[COG2010] Cytochrome c, mono- and diheme variants |
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| TIGRFAM ID | [TIGR02866] cytochrome c oxidase, subunit II |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGCAAG TGTTGTGTTG TTTGCTGGCG TTGCTATTTA CGCCCACCAT ACTCGCAGCA
GATATGCCCC TGAATATGAC ATCAGGGGTC ACAGAGATCA GCAATAAGGT GTTTAGCCTT
CATATGACGA TTCTCTATAT CTGTTGTGCC ATAGGCCTAG TCGTCTTTGG GGTGATGATC
TACGCCATCA TCAACCATAG GCGCTCTAAG GGTGCCGTCG CGGCAAACTT TCATGAGAGC
ACTAAGGTAG AGATCGCCTG GACGCTCGTT CCCTTTGTCA TCTTGATCCT CATGGCCATC
CCGGCCACCA AGACTCTCAT CGCCATGGAA GATCCCAGCA ATGCCGATCT CACCATCAAG
ATCACTGGCT CCCAATGGAA ATGGCACTAC AGCTATTTTG ATCAAGACAT CAGCTACTAT
AGCCTGCTGG CGACTCCCAG AGAACAGATA GAGGGCAAGG AGACCAAAGG CGAACACTAT
CTGCTGGAGG TCGACAAGCC GCTGGTATTG CCGGTCAATC GTAAGATCCG TTTCCTGATG
ACCTCGGAAG ATGTGATCCA CTCCTGGTGG GTGCCGGCCT TCGCGGTAAA GAAGGATGCT
AACCCAGGCT TTATCAACGA GGCCTGGACC CGCATCGACA AGCCAGGCAT CTACCGCGGC
CAGTGCGCCG AGCTTTGCGG CAAGGATCAC GGATTCATGC CCATCGTAGT GCAGGTACTT
TCCGAGGCCG ATTTCGACAA CTGGATTGTC GAGCAGGAGG CACAGGCCAG CGCGGCCGCC
GCCGAGGCGC AGGCCGCACT GTCGAAGACC CTGTCGAAAG AAGAGCTGAT GGCTCAGGGC
GAACAAGTCT ATATGGCCCG CTGCGCCGCC TGCCACCAGC CAAATGGCGC CGGCCTGCCG
GGTGTATTCC CCTCGCTCAT AGGCAGCCCA ATCATCAAGG GCCCTGTCGC CGATCACTTG
GATGTGGTGC TACATGGCCG CTCCGGCACA GCCATGCAGG CCTTCGCCCA GCAGCTCACC
GCCACAGAGA TTGCCGCCGT GGTTACCTTC GAACGTAATG CCTGGGGTAA CGACACGGGC
GATACGGTTC AGGCAGCCGA CGTTAACCAG GCAAACTCAG GCGCATCGAG CGGGGCTGAT
ACAGGAGCAG ATGCAGCTGC AGAAGCGGTT CAATCTGTGC CTACCCCGGC AGCCGATTCG
AGTGCGGCAG CAAGCTCCAC CGCCGAGGAT CCCCAAGCAC CTGTGTTAGA CGATCTGACC
ATGGATGAGC TGATGGCCAA GGGTGAACAG GTATATCTCG GCCACTGCGC CGCCTGTCAT
CAGGCCACAG GCATGGGATT ACCCGGCGCC TTCCCCGCCC TAAAAGGCAG CGCCATCGCC
ACAGGGCCAG TTAAGAATCA CCTAGACATA GTGCTTCACG GTAAGCCTGG CACCGCCATG
CAGGCTTTCG CCAGTCAGTT AACGCCACAG GAAATCGCCT CGGTGATCAC CTTTGAGCGT
AACGCCTGGG GTAACAACAC AGGCGACATG GTTCAGGCAA CAGACGTCAA GCAACAGGGT
CAATAG
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| Protein sequence | MKQVLCCLLA LLFTPTILAA DMPLNMTSGV TEISNKVFSL HMTILYICCA IGLVVFGVMI
YAIINHRRSK GAVAANFHES TKVEIAWTLV PFVILILMAI PATKTLIAME DPSNADLTIK
ITGSQWKWHY SYFDQDISYY SLLATPREQI EGKETKGEHY LLEVDKPLVL PVNRKIRFLM
TSEDVIHSWW VPAFAVKKDA NPGFINEAWT RIDKPGIYRG QCAELCGKDH GFMPIVVQVL
SEADFDNWIV EQEAQASAAA AEAQAALSKT LSKEELMAQG EQVYMARCAA CHQPNGAGLP
GVFPSLIGSP IIKGPVADHL DVVLHGRSGT AMQAFAQQLT ATEIAAVVTF ERNAWGNDTG
DTVQAADVNQ ANSGASSGAD TGADAAAEAV QSVPTPAADS SAAASSTAED PQAPVLDDLT
MDELMAKGEQ VYLGHCAACH QATGMGLPGA FPALKGSAIA TGPVKNHLDI VLHGKPGTAM
QAFASQLTPQ EIASVITFER NAWGNNTGDM VQATDVKQQG Q
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