| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0097 |
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| Symbol | |
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| ID | 4921957 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 108232 |
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| End bp | 108909 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640161608 |
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| Product | two component transcriptional regulator |
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| Protein accession | YP_001092228 |
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| Protein GI | 127511031 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00144432 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATAT TACTGGTAGA AGATGATGCG ACCACCACAG AGTATGTGGT CAAGGGATTT
GCCGAACAGG GGCACAATAT CGAAACCGCT AGCGACGGCC ATCAGGGCCT GCTGCTGGCC
ACCAGTATGC AGTATGACCT GGTGATACTG GATCGCATGC TGCCGCAGCT CGACGGCCTC
AAGCTATTGG CGGCGCTGCG CGCGACCGGC AACCAGACAC CGGTACTCAT CCTGTCGGCG
CTGAGCCATG TGGATGAGCG CGTCAAGGGC CTCAGGGCCG GTGGCGACGA CTACATGACC
AAGCCTTTTG CCTTCTCCGA ACTCTTGGTG CGCGCCGAGA AGCTGATGCA GCGTGGTAAC
TCCGCGCCGG CGCAGACAGA GCTTAAGGTG GGCGAGTTGG TCATGGAACT GCTGACCCGC
AAGGTAACCC TGGCGGGCAG TGAGATCTTG TTGCAACCCA AAGAATTTCA ATTGCTCAAG
TACTTGATGG AACACCCGAA TCAGGTGATC AGCCGCACCC TCTTGTTCGA GGCGGTGTGG
GATTACCATT TCGATCCTCG CACCAATGTG ATCGACGTGC ATATCGCTAA GCTGAGACGT
AAGTTTGAAG AGCTGGGCTT TGGCGAGCTG ATTGAAACGG TTCGAGGGGC TGGCTATCGC
CTCCGTCAAG GGCATTAG
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| Protein sequence | MKILLVEDDA TTTEYVVKGF AEQGHNIETA SDGHQGLLLA TSMQYDLVIL DRMLPQLDGL
KLLAALRATG NQTPVLILSA LSHVDERVKG LRAGGDDYMT KPFAFSELLV RAEKLMQRGN
SAPAQTELKV GELVMELLTR KVTLAGSEIL LQPKEFQLLK YLMEHPNQVI SRTLLFEAVW
DYHFDPRTNV IDVHIAKLRR KFEELGFGEL IETVRGAGYR LRQGH
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