Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0032 |
Symbol | |
ID | 4920496 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 34426 |
End bp | 37575 |
Gene Length | 3150 bp |
Protein Length | 1049 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640161544 |
Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
Protein accession | YP_001092164 |
Protein GI | 127510967 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTCGTT TTTTCATCGA TCGCCCTATC TTTGCCTGGG TGATTGCAAT TATTGTTATG TTGGCCGGGG TGCTCTCTAT CATGAAGCTT CCCGTGTCGC AGTACCCGAG TATTGCGCCG CCGACCGTGG TGATTAACGC CATCTATCCG GGTGCGTCTG CCAAGACCAT GGAAGACACT GTGACCCAGG TGATCGAGCA GCGCATGACG GGTATCGACC ATCTGCGTTA CATCTCGTCT ACCAGTGACA GCTTTGGTAA TGCGCAGATC ACCCTGACGT TCAATGCCGA GGCTGATCCC GATATCGCCC AGGTTCAGGT GCAGAACAAG CTGCAGCTGG CGATGCCTCT GCTACCGCAA GAGGTGCAGG CGCAAGGGGT TAAGGTCAAC AAATCCAGCT CGGGTTTCTT GATGGTACTG GGCTTCGTGT CCCAGGATGG CTCGCTGGAG AAGAATGATA TCTCCGACTA TGTGGGCTCT AACATCTTAG ACCCTATGAG TCGTGTGCCC GGTGTGGGCG AGATCCAGCT GTTCGGTGCC CAGTACGCCA TGCGTATCTG GCTAGACCCG CTCAAGCTGA CTCAATACAA CCTCACCAGC CTGGACATCA TGGCCTCGAT TCGTGAGCAG AATGCTCAGG TGTCTGCGGG TCAGTTGGGC GGCGCGCCCT CTATTGCGGG TCAGGAACTC AACGCCACGG TAACGGCTCA GAGTCGTCTA CAGACCGCCG AAGAGTTTAG AAAGATCATC ATCAAGTCCG ATCCGTCGGG CGCCAAGGTT TACCTGGAAG ATGTGGCCCG AGTCGAACTG GGCTCGGAAA GTTATTCGGT AGAGTCCTTC TATAACGGCC GTCCGGCTGC CGGTCTGGCG ATCAAGCTGG CTACGGGGGC TAACGCCCTG GCGACCGCCG AGCGTGTGCG TGAGAAGGTC GATGAGATGA AGCCTTTCTT CCCGCAAGGG CTGGAAGTGG TTTATCCCTA TGACACCACC CCCTTCGTTG AGAAATCGAT CGAGGGCGTA GTGCATACCC TGCTGGAAGC CGTGGTACTG GTGTTTGTGA TCATGTACCT CTTCCTGCAG AACTTCCGTG CGACCCTGAT CCCGACCATT GCGGTACCTG TGGTACTGCT GGGGACCTTC GCCATCCTGT CGGCTACCGG CTTCTCGATC AACACCCTGA CCATGTTCGC CATGGTATTG GCCATCGGTC TGCTGGTGGA TGACGCCATC GTGGTGGTAG AGAACGTCGA ACGTGTGATG TCCGAAGACG GCTTGAGCCC GATTGAGGCC ACCAAGAAGT CGATGGACCA GATCACCGGC GCCCTGGTGG GTATCGGTCT AACCCTGTCG GCGGTGTTCG TGCCTATGGC ATTCATGTCG GGTTCGACCG GTGTGATCTA TCGTCAGTTC TCCGTGACTA TCGTATCGGC CATGGCGCTT TCTGTGCTGG TGGCGATCAT CCTGACGCCG GCACTGTGTG CCACCATGCT TAAGCCGATT GCCAAGGGCC ACCATGCGGT CGAGACGGGT TTCTTCGGTT GGTTTAACCG CACCTTCGAC AAGATGACCT CGCGTTACGA GGCTGGCGTG GCAGCGATGA TCAAGCGCGC CGGTCGCGTC ATGTTGATCT ACGTGGCCCT GACGGTTGCC GTGGGTTGGA TCTTCATGCG CATGCCGACC GCCTTCTTGC CGGACGAAGA CCAGGGTATC TTGTTTACCC AGGCGATCCT GCCGACCAAC TCGACCCAAG AGAGCACCAA GAAGGTGATG AGCAAGATCT CCGACTTCTA TCTCAACGAG ACGGGCGACA GCGTCAAGTC GGTATTTAGC GTATCAGGCT TCAGCTTCGC CGGTAGTGGT CAAAACATGG GTCTTGCCTT CGTTGGCATG AAAGACTGGT CTGAGCGTAC CGGCCCGGGT CAAGACGTTA AGTCGGTCGC CGGACGTGCC ATGGGCATGT TCATGCAGAT GAAGGAGGCC TTCGTGTTTG CCTTCGTACC GCCTGCGGTG ATCGAGCTGG GTACGGCAAA CGGTTTCGAT TTCTATCTGC AAGACAGAAA TGGCCAAGGC CATGAGAAGC TGCTCGAGGC CCGTAATATG CTGCTGGGCA TGGCGTCGCA AAATCCTAAC CTGGTGGGTG TGCGTCCAAA CGGTCAGGAA GATGCGCCTA TGTATCGCAT CCATATTGAT CACGCCAAGC TTCGCGCCCT GAGTATCGAT ATCGACGCGG TCAACAGCGT GTTGGGTACT GCCTGGGGTG GTAGCTATGT GAACGACTTC ATCGACCGTG GTCGTGTGAA GAAGGTCTAT GTGCAGGGTG ATGCCCAGTA CCGTATGCAG CCGGAAGACC TCGATACCTG GTATGTGCGT AACAGCCAGG GTGAGATGGT GCCTTTCTCG GCCTTCGCCA CAGGTACCTG GGAATATGGT TCGCCGCGTC TAGAACGTTT CAACGGTCTG CCTGCGATGA ACATCCAGGG CGGCACGGCA CAAGGTTATA GTACGGGTGC GGCTATGGCC GACATCGAGG CTATGGTGGC CAAGTTACCG CCAGGATTCG GCGTCGAGTG GAACGGCCTG TCATACGAGG AACGTCTCTC GGGTAACCAG GCGCCGGCGC TGTATGCGCT GTCTATCATG GTGGTCTTCC TGGTTTTGGC GGCCCTGTAT GAGAGCTGGT CTGTGCCGTT TGCGGTGATC TTGGTGGTAC CACTGGGGAT CATAGGAGCC TTGCTGGCGA TGAACGGTCG TGGCCTGCCT AACGACGTGT TCTTCCAGGT GGGTCTGTTG ACTACCGTAG GTCTGGCGAC CAAGAACGCC ATCCTGATCG TCGAATTCGC CAAAGAGTTC TACGAGAAGG GCGCGGGTCT GGTGGAAGCG ACCCTGCACG CGGTGCGTGT GCGTCTGCGT CCTATCCTGA TGACCTCGCT GGCCTTCGGT CTGGGTGTTG TGCCGCTGGC CATCAGCTCG GGCGTAGGTT CGGGCAGCCA GAACGCTATC GGTACCGGCG TATTGGGCGG CATGATGAGT TCGACCTTCC TGGGGATCTT CTTTATCCCT ATCTTCTTCG TGATTGTGGA GCGCATCTTC AGCAAGCGCG AGAAGAAGGG CGCCGCAACT CAGGTCGCCG ACTCGACACC ACAAGAATAG
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Protein sequence | MARFFIDRPI FAWVIAIIVM LAGVLSIMKL PVSQYPSIAP PTVVINAIYP GASAKTMEDT VTQVIEQRMT GIDHLRYISS TSDSFGNAQI TLTFNAEADP DIAQVQVQNK LQLAMPLLPQ EVQAQGVKVN KSSSGFLMVL GFVSQDGSLE KNDISDYVGS NILDPMSRVP GVGEIQLFGA QYAMRIWLDP LKLTQYNLTS LDIMASIREQ NAQVSAGQLG GAPSIAGQEL NATVTAQSRL QTAEEFRKII IKSDPSGAKV YLEDVARVEL GSESYSVESF YNGRPAAGLA IKLATGANAL ATAERVREKV DEMKPFFPQG LEVVYPYDTT PFVEKSIEGV VHTLLEAVVL VFVIMYLFLQ NFRATLIPTI AVPVVLLGTF AILSATGFSI NTLTMFAMVL AIGLLVDDAI VVVENVERVM SEDGLSPIEA TKKSMDQITG ALVGIGLTLS AVFVPMAFMS GSTGVIYRQF SVTIVSAMAL SVLVAIILTP ALCATMLKPI AKGHHAVETG FFGWFNRTFD KMTSRYEAGV AAMIKRAGRV MLIYVALTVA VGWIFMRMPT AFLPDEDQGI LFTQAILPTN STQESTKKVM SKISDFYLNE TGDSVKSVFS VSGFSFAGSG QNMGLAFVGM KDWSERTGPG QDVKSVAGRA MGMFMQMKEA FVFAFVPPAV IELGTANGFD FYLQDRNGQG HEKLLEARNM LLGMASQNPN LVGVRPNGQE DAPMYRIHID HAKLRALSID IDAVNSVLGT AWGGSYVNDF IDRGRVKKVY VQGDAQYRMQ PEDLDTWYVR NSQGEMVPFS AFATGTWEYG SPRLERFNGL PAMNIQGGTA QGYSTGAAMA DIEAMVAKLP PGFGVEWNGL SYEERLSGNQ APALYALSIM VVFLVLAALY ESWSVPFAVI LVVPLGIIGA LLAMNGRGLP NDVFFQVGLL TTVGLATKNA ILIVEFAKEF YEKGAGLVEA TLHAVRVRLR PILMTSLAFG LGVVPLAISS GVGSGSQNAI GTGVLGGMMS STFLGIFFIP IFFVIVERIF SKREKKGAAT QVADSTPQE
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