Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0018 |
Symbol | fadA |
ID | 4920559 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 19854 |
End bp | 21017 |
Gene Length | 1164 bp |
Protein Length | 387 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640161530 |
Product | 3-ketoacyl-CoA thiolase |
Protein accession | YP_001092150 |
Protein GI | 127510953 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0183] Acetyl-CoA acetyltransferase |
TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases [TIGR02445] fatty oxidation complex, beta subunit FadA |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.56685 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.969653 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACAAG CAGTTATTGT AGATTGCATC CGTACTCCCA TGGGCCGCTC TAAGGCTGGG GTATTCAGAA ACATGCGCGC CGAATCGCTC TCTGCCGAGC TGATGAAGGC CCTCTTGGTT CGCAATCCTC AACTCGATCC TAATACTATT GAAGACGTTA TCTGGGGTTG TGTGCAGCAG ACGCTGGAAC AGGGCTTCAA CATCGCACGT AATGCGGCGC TGCTAGCCGG CATTCCGAAA CAGGCCGGAG CGGTGACGGT AAACCGTCTA TGTGGGTCTT CCATGGAAGC CATTCATCAG GCGGCTCGCG CTATCATGAC TGGCATGGGC GATACCTTCA TCGTCGGCGG TGTCGAACAC ATGGGCCACG TGCCAATGAA CCATGGGGTC GACTTCCACC CAGGCCTGGC CACCAATGTC GCCAAGGCCT CTGGCATGAT GGGCCTCACC GCCGAGATGC TAGGCAAGAT GCACGGCATC ACACGCCAAC AACAAGACGA GTTTGCAGTA CGTTCACACC AACGTGCCCA CGCGGCAACG GTCGAAGGCC GCTTTGCCAA CGAGATCCAT GCTATCGAGG GTCATGATGC CAACGGCGCA CTGATCAAGG TAATGCATGA CGAGGTGATT CGTCCTGAGA CCTCACTGGA ATCACTGGCG ACCCTGCGTC CGGTATTCGA CCCAGCCAAC GGTACTGTCA CCGCGGGTAC CTCTTCGGCA CTGTCTGACG GCGCCTCGGC CATGTTGGTC ATGGAAGAAG AGAAAGCCAA GGCCTTAGGT CTGCCGATCC GTGCTCGTAT CCGTTCTATG GCGGTTGCTG GTTGTGACGC CGCCATCATG GGCTATGGTC CAGTACCGGC CACCCAGAAG GCGTTGCAAC GCGCCGGCCT CACCATGAAC GACATCGACC TTATCGAGCT CAACGAGGCC TTCGCCGCGC AGTCACTGCC ATGTGTGAAA GATCTTGGCT TGATGGATCT GGTGGATGAG AAGGTGAACC TCAACGGCGG CGCTATCGCC CTGGGTCATC CACTGGGCTG CTCGGGCGCA CGTATCTCGA CCACGCTGAT CAACCTGATG GAAAGCAAAG ATGCGACCCT AGGTCTGGCG ACCATGTGTA TCGGTCTGGG CCAAGGCATA GCAACCGTAT TCGAACGCGC CTAA
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Protein sequence | MKQAVIVDCI RTPMGRSKAG VFRNMRAESL SAELMKALLV RNPQLDPNTI EDVIWGCVQQ TLEQGFNIAR NAALLAGIPK QAGAVTVNRL CGSSMEAIHQ AARAIMTGMG DTFIVGGVEH MGHVPMNHGV DFHPGLATNV AKASGMMGLT AEMLGKMHGI TRQQQDEFAV RSHQRAHAAT VEGRFANEIH AIEGHDANGA LIKVMHDEVI RPETSLESLA TLRPVFDPAN GTVTAGTSSA LSDGASAMLV MEEEKAKALG LPIRARIRSM AVAGCDAAIM GYGPVPATQK ALQRAGLTMN DIDLIELNEA FAAQSLPCVK DLGLMDLVDE KVNLNGGAIA LGHPLGCSGA RISTTLINLM ESKDATLGLA TMCIGLGQGI ATVFERA
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