| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0002 |
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| Symbol | |
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| ID | 4921953 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1511 |
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| End bp | 2611 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640161514 |
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| Product | DNA polymerase III, beta subunit |
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| Protein accession | YP_001092134 |
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| Protein GI | 127510937 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
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| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000158001 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000341195 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGAAATTTT CAATTGATAG GGATGCCCTA TTAAAGCCGC TTCAACTCGT GAGTGGGGCG
GTGGAGAGAC GACATAACTT ACCTATTCTG GCAAACCTTT TAGTTGAAGT AAGTGGTCAC
TCACTTAAGT TGACCGGTAC CGATTTAGAG GTCGAATTAG TCGGCCAGGC AGAGCTGCAG
GGTGAGGTTC AAGAGGGCCG CACCACAGTA CCGGCAAAGA AATTTCTCGA TATCGTTAAG
TCCCTTCCCG ATCAAGTCGA ACTCAAAATA GAGCAGCAGG ATAACCGTCT GTTGCTGCGC
TCGGGCCGCA GCCGCTTTAC CCTGGCGACC CTGCCGGCCG AAGAGTATCC CAATGTGGAT
GCCTTCCAGG CCGATATCGA ATTTACCCTC AAGCAGGGCA CCCTGAAGTC GCTGATCGAT
GCGACTCAGT TCTCCATGGC TAACCAGGAT GTGCGTTACT ACCTGAATGG TCTGTTGCTG
GAAACCGAAG GCAATGTGCT GCGTGCCATC GCCACAGACG GTCATCGTCT GGCCTTGAGT
CACCGCATGG TGCAAGACTC TCTGCCGGAG AAGCAGGTGA TCGTGCCGCG CAAAGGCGTA
TTAGAGCTGC AGCGTCTGTT CGAAGGTGAA GATCTGGATG TGACCCTGTC TATCGGTGAA
AACGCCATTC GTGCCACGAC TCAGAGCGCC GTGTTTACCA GTAAGCTGGT GGATGGTCGC
TTCCCTGACT ATCGTCGTGT GTTGCCTAAG GGCGGTGACA AGATCGTTAT CGCCAGCCGT
AACCATCTCA AGCAGGCGCT GCTGCGTGCC TCTATTCTCT CGAACGAGAA GTTCCGCGGT
GTGCGCGTGC AGCTGGAGCA GAACCTGATT AAGATCACCG CCAACAACCC CGAGCAGGAA
GAGGCGGAAG AGATCCTCGA TATCGAATAT GACAACGCAC CGCTAGAGAT CGGCTTCAAC
GTCAGCTATC TCCTGGACGT GCTCAACAAC CTACCATCGG ATGACGTGCG CATCACGCTG
ATCGATGGTA ACTCCAGCGC CCTGATCGAA AATCACGTCG AAGAAGATTC TATGTACGTC
GTGATGCCGA TGCGTCTCTA G
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| Protein sequence | MKFSIDRDAL LKPLQLVSGA VERRHNLPIL ANLLVEVSGH SLKLTGTDLE VELVGQAELQ
GEVQEGRTTV PAKKFLDIVK SLPDQVELKI EQQDNRLLLR SGRSRFTLAT LPAEEYPNVD
AFQADIEFTL KQGTLKSLID ATQFSMANQD VRYYLNGLLL ETEGNVLRAI ATDGHRLALS
HRMVQDSLPE KQVIVPRKGV LELQRLFEGE DLDVTLSIGE NAIRATTQSA VFTSKLVDGR
FPDYRRVLPK GGDKIVIASR NHLKQALLRA SILSNEKFRG VRVQLEQNLI KITANNPEQE
EAEEILDIEY DNAPLEIGFN VSYLLDVLNN LPSDDVRITL IDGNSSALIE NHVEEDSMYV
VMPMRL
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