Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_4446 |
Symbol | |
ID | 5369276 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009661 |
Strand | - |
Start bp | 67036 |
End bp | 67602 |
Gene Length | 567 bp |
Protein Length | 188 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640819242 |
Product | TraE family protein |
Protein accession | YP_001355464 |
Protein GI | 152998543 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02761] type IV conjugative transfer system protein TraE |
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Plasmid Coverage information |
Num covering plasmid clones | 59 |
Plasmid unclonability p-value | 0.622638 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTACAAA AGAACAAAAT CGACTTTATC CGCATTGCAA AATCCCTCAA CACGCTTCTG TTAATCGGCT TTACCGTAGC CATGATCAGT AACACGGTCC TAGCAAGTAT TGTCTGGATG GCTTACTTCA ATAAAAGCCG CACCGTTGTA CCACCGACCA TCAGCGCAGC CTTTACCGTA TCAGACACCT CTATAGACGA ACCGTATTTA CAGCAAATGG CCGAATACTT TGCCTTTCTA AAGCTCAATG TCACGCCCGC TTCGGTAGAC CATCAGTACA AACAGCTCGC AACGTATATC GATGAAGCTG ATTGGCATCA GATGCAACCT TTACTGGTTG AAGATGCAGC CATGATTAAA AAACAAAACA TCAGCAGTCA CTTCACCATC AATGAAACCC AAATAGCCCT TGATGATCGT CTCGTCAAAA TAACGGGCAC GTTAAACAAA TATGTGGGCA AACGCGCGCT AGAACCCGAA ACCATTAGCT ACATCATTGC CATGAATTAT TACCATGGCC AACTGTCGCT CAAAGCCATT AAGAAAGTGC AAAAGGACGT TAAATAA
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Protein sequence | MLQKNKIDFI RIAKSLNTLL LIGFTVAMIS NTVLASIVWM AYFNKSRTVV PPTISAAFTV SDTSIDEPYL QQMAEYFAFL KLNVTPASVD HQYKQLATYI DEADWHQMQP LLVEDAAMIK KQNISSHFTI NETQIALDDR LVKITGTLNK YVGKRALEPE TISYIIAMNY YHGQLSLKAI KKVQKDVK
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