Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_4445 |
Symbol | |
ID | 5369287 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009661 |
Strand | - |
Start bp | 66218 |
End bp | 67036 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640819241 |
Product | Type-F conjugative transfer system secretin TraK |
Protein accession | YP_001355463 |
Protein GI | 152998542 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02756] type-F conjugative transfer system secretin TraK |
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Plasmid Coverage information |
Num covering plasmid clones | 56 |
Plasmid unclonability p-value | 0.620331 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGATTG CTAACCCACT TGTTTTCGCA GCCTGCGCGC TTTTTCCTAT GAGCGTGTTA GCGGCAAATA CGCCCCCAAA ACACTACGGA TTCAATGACA GTGAAACGGT TCCTATTGAG CTGTCGAGTG TTGATATCAA CCGCTTAGTC GTTGAAGGTG ACAAAATCAC CTCGATTGAT TGTCCAGAAG GATTTTGCGT TGTCACTGGC ACGAAATCGG ATAAATCCGG TGCAGCGCGC GTTAACCTCA ATTTGGCCAT GCCATTCACA GCCTATGTAT CAACAGAAAA GGGCAGACAT TTCGGCTTAT TCATCAGCCC TAAAGCCATT CCTGCCGTGA CCTCTATCTT CACTGCAGAA CATTATCGCG AAGAACAACC CTCCGTTTTC GATAAGAAAA CCCCGTACCC CACCATGATG ACCGAGTTCA CCGCGCAAAT GATCCGCTAC CTCGCCACGG GTAAACCAAT TGACGGTTAT CGTGTGCATG TCGTCAATGA TGACCTTGAA CGCACCACGG TAGACAGTGA GCCTAGAGGC ACGGAAACAT CTATCGATGA CGCGATGTTT ACTCGCTTAA ATGAGCAACA AATGCCCAAA CCAGCAGGAC TGACGACAGA ACCTGCTTTC GTGTTCACAG GTAAGCATTT CAACGGCATC ATTTATCGCG TAACCAATCA CGCAGCACTC CCAGTCACCC TCACCACAGC GCAGTTCTAC TCGCCAACGA CGCGAGCCGC TGCCTTATCA ACCTATGAAT TGGCACCAAA GCAAACAGGC CACCTCTTTG TGGTCTCGGG CGGGGAGAGC ATGCAATGA
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Protein sequence | MKIANPLVFA ACALFPMSVL AANTPPKHYG FNDSETVPIE LSSVDINRLV VEGDKITSID CPEGFCVVTG TKSDKSGAAR VNLNLAMPFT AYVSTEKGRH FGLFISPKAI PAVTSIFTAE HYREEQPSVF DKKTPYPTMM TEFTAQMIRY LATGKPIDGY RVHVVNDDLE RTTVDSEPRG TETSIDDAMF TRLNEQQMPK PAGLTTEPAF VFTGKHFNGI IYRVTNHAAL PVTLTTAQFY SPTTRAAALS TYELAPKQTG HLFVVSGGES MQ
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