Gene Shew185_4406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_4406 
Symbol 
ID5369302 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009661 
Strand
Start bp21807 
End bp22499 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content41% 
IMG OID640819203 
Productintegrase catalytic region 
Protein accessionYP_001355425 
Protein GI152998504 
COG category[L] Replication, recombination and repair 
COG ID[COG3316] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.00000104677 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.339026 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAATCA ACTTTTCAGG ACGACATTAT CCACCAGATA TCATCATGAT GGCGTTGCGT 
TATTACCTGG CTTATAAACT CAGTTATCGT GAAATAGAAG AAATATTCGC TGAGCGTCAT
ATTCATTTTG ACCACTCAAC CTTGAACCGG TGGGTGATTA AATACGCACC GCAACTCGAT
GCTATATTCA GGAATAAAAA ACGTCGAGTC TCTGGCTCCT GGCGAATGGA TGAAACCTAC
ATCAAAGTAA AAGGTCGCTG GGTTTACTAT TATCGAGCTG TCGATAAGTA TGGTACTATT
ATTGACTTTT ATTTGAGTGA AACCCGCGAC GAGTCAGCTG CTCAGGCATT TTTCAACAAA
GCCATCAACC AACATGGGTT GCCAGAAAAG GTTGTTATTG ATAAAAGCAG TGCTAATGCT
GCTGCATTAG ATACGGTCAA CCTTCGCCTT TGGTTATCTG GGAATATGCT GTTTATGATT
GAAGTATTGG CAATCAAATA TCTGAATAAT ATTGTCGAGC AAAGCCATCG AAAAGTGAAG
GGAAAAATGC ATCAATGTCT AGGATGGAAA TCTTGGCTTG GTGCAGAGGC AACATTAGCG
GGTATTGAAG TGTGCGACAT GATTAAAAAA GGTCAGATGA TGAGCGCTGA AAATATGACA
CCATGGGAGC AGTTTTATGC TTTGGCGGCA TAG
 
Protein sequence
MTINFSGRHY PPDIIMMALR YYLAYKLSYR EIEEIFAERH IHFDHSTLNR WVIKYAPQLD 
AIFRNKKRRV SGSWRMDETY IKVKGRWVYY YRAVDKYGTI IDFYLSETRD ESAAQAFFNK
AINQHGLPEK VVIDKSSANA AALDTVNLRL WLSGNMLFMI EVLAIKYLNN IVEQSHRKVK
GKMHQCLGWK SWLGAEATLA GIEVCDMIKK GQMMSAENMT PWEQFYALAA