Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_4403 |
Symbol | |
ID | 5369249 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009661 |
Strand | + |
Start bp | 17989 |
End bp | 18861 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640819201 |
Product | integrase catalytic region |
Protein accession | YP_001355423 |
Protein GI | 152998502 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2826] Transposase and inactivated derivatives, IS30 family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 52 |
Plasmid unclonability p-value | 0.291607 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.47214 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCAAGCCG CTACAATTAG CAGGGAGTTT TCCCGCAATA CGGGTAAACG TGGCTATCGC TTTAAACAAG CTCAAACATC AACAATTAGA CGCCGATTAG CCGCTTGTAA AGCCATTAAA ATGACAACAA CGACCGTTGA GTTAATTGAA TCAAAAATCA ACGCGAAATG GAGTCCAGAG CAGGTGTCGG GGTGGCTTAG GGAAGACCAG TGCATTGATA TTAGTTATGA AACCATTTAT AAGCACATTT GGTCAGACAA GCAAAATGGT GGCCATTTAT TCCAACAATT ACGCAGAAAA GGTAAGGCTT ATCAATCACG TAGTAAGGAT AAGCAAGCCG GCAGAGGGTT TATTAAGAAC CGTATAAGTA TTGATGAGCG CCCACATGTT GTTGATGATA AAAGTAGGGT GGGTGATTGG GAAATTGACT TGGTTATAGG CAAAGGGCAC AGTGGCGCAC TGGTCACGAT TGTAGAGCGG AAAACGAGCT TTACCGTTTC AACACGTGTA GATGACAAAT CAGCAAAAAC AGTAACAGCA GCCACCATCG CTTTGTTAGC GCCGTTTAAA GGCGCGGTGC TCACTATAAC GGCGGATAAT GGTAAAGAAT TTGCGTACCA TGAAAAGATG ACAGAAAGTT TGAAATGTGA TGTCTATTTT GCCGATCCTT ATTGTTCATG GCAACGAGGA TTGAATGAAA ACACCAATGG CCTATTACGA CAATATTGGC CGAAATCAAC AGACTTTAAA AAGGTATCGC AATCAGAGGT TCAGGATGTA ATAGCCAATC TCAATGATAG GCCAAGAAAG AAACTAAATT ATAAAACACC AGCCAAATTA ATGGCTGAAC ACATGGTGGC TATAGCCGCT TAG
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Protein sequence | MQAATISREF SRNTGKRGYR FKQAQTSTIR RRLAACKAIK MTTTTVELIE SKINAKWSPE QVSGWLREDQ CIDISYETIY KHIWSDKQNG GHLFQQLRRK GKAYQSRSKD KQAGRGFIKN RISIDERPHV VDDKSRVGDW EIDLVIGKGH SGALVTIVER KTSFTVSTRV DDKSAKTVTA ATIALLAPFK GAVLTITADN GKEFAYHEKM TESLKCDVYF ADPYCSWQRG LNENTNGLLR QYWPKSTDFK KVSQSEVQDV IANLNDRPRK KLNYKTPAKL MAEHMVAIAA
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