| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3988 |
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| Symbol | |
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| ID | 5372231 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 4759183 |
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| End bp | 4761102 |
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| Gene Length | 1920 bp |
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| Protein Length | 639 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640832250 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001368172 |
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| Protein GI | 153002491 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACTGT TTAGACAGAT TTATTCGCTG CTTTTTAGCC TATTTTTGCT CGTAGTTGCA
AGCCTTGGCT ATGTGCAATT TACTGAGACT CAAAGCTTTT TAACCAAGCA AATGGAGTCA
GATCTAAACA ATGCCAGCAC TTCACTTGGT CTAATGCTTA CTCCAGCACT TCAAGCTGGC
GATACCGCAG CGGCAGAAAC CTTAGTGAAT GTCATCTTTG AAGGTGGCTA TTATCAAAAT
GTAAAGCTGA CATGGATGGT GGATGGTAAG CAACAAGAGT GGAATAACCC TTTAAGAATT
GAAGATGTAC CTCAATGGTT TATCAATTTA AATCTATTTA AAACCATCAA AAAACAAAGC
ACTATCACTT CTGGCTGGTT GCAACTCGCG CAACTTGAGA TCACCGCTCA TCCTGGGTTT
GGTTACCATG AGCTGTGGCG AATCATGTCC AATACTATCA TTGCCTTCTC TCTACTTTTC
CTCGTCGCCA TTTTTACCGC AAGAATCGGT TTAACGTGGA TATTAAAACC TCTACACACT
TTGTCGGAAC ACGCGAAAAG TATTGCGGCA CGCCAATTTG GCCCAGACAT GGCATTACCT
AAGACCACTG AATTGAAAGA CTTAGTGACC GCATTTAACA GTATGTCGGC GCAGTTGAAG
CAAGTGTTTC ATTCCCTCGA CGAAGAAGTC GGCGCATTAC GTAAGAAGAA TCTTGTCGAT
CCTGCGTCAG GCCTGCCTAA CCGCCAATAT GTGGTGAGCC GTTTAAATGG TTGGTTGAGT
GAACCTAGCA GCGGCGCGTT ATTTCTTGCT AAACTCGACT GGCTCGAAGA AGTGCACAGC
AAATATGGCT ACCAAGTTCG AGATGAAACC ATACGGATCT TGGCAGAAAA GTTTCAGCTG
CAGTTAAACG AAATAACACC GTCTGTTATA GGCCGCATTG CCGCCTATGA ATTTGCATTT
TTAGTGACTG ATGTTGAACA CGATCAAATC AGCAAATATT TACAAACGCT TATCCGCACC
ATCAACCAAG AAATGTCGAA GGCAGGCTGT AAGCCTAATG AAGACTTTGC GATTGGTATT
GCGGAGCGTA TTGGGCAAAT GAATGTGTCG GATATTTTGG CCCAAGCCGA CAACGCCCTT
CAAAAAGCGT TACAAGAAAA TAAAACTTTC CATTGGTTTG AAACCACAGA ACAGCAACTA
TTCACCCGCG AACAGTGGCG GGATAACCTT AGCCATGCCA TCAGTAATAA GAAGTTCAAG
TTTAGATGGC AGCCTATCCA GTTTTGCGAT GGGGATGGTA TAGCGCAGCG GGAATTATAT
TGCCAATTAG AGCTTGGCGA TCAACTCGCC CATGCAGGGC AATTTATGCC TTATATCGAG
CTCTTATCTC TCGGTGCCTT GCTCGATAAA TGCTTGATTG AAACCGTCTA CGAGCAAAAA
CTACTAGAGC GTAGCTATGA ACCGCTCGCG ATTAACTTAA CCCACCAAAG CATTAACGAT
CCTCAGTTCC ATGAGTGGCT CAATCACTTT TTACGTAATG CCGCATTTAT TGAGCGGATC
TGCTTCGAAA TCCCTGAAGC GGGCGTTTAT AGCGATCTTA AGTCGTGTCA GCACTTATGT
AACATTATTC GAGATAATGG CGCTAAGTTC GGCATTGATC ACTTTGGCCG TCAGTTTGGC
TCTATGTCTT ATCTACAGGA ATTAAGACCG AGTTATGTGA AACTCGATCA ATCCTTCGCC
TACTATGATG AGACACACCA TAATAGTGAG CTCTGCCGCG CGCTAATCAA CGTAGCGAAA
GGATTAGATA TTCAAGTCAT AGTGACGGGT ATTCAAGAAA AAGCTCAGCT AGAGCGCTTT
AACGAGCTTA GAACAGATGC CTATCAAGGC TTTATCGCCC CTCCGGTGAG TCTTGATTAA
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| Protein sequence | MTLFRQIYSL LFSLFLLVVA SLGYVQFTET QSFLTKQMES DLNNASTSLG LMLTPALQAG
DTAAAETLVN VIFEGGYYQN VKLTWMVDGK QQEWNNPLRI EDVPQWFINL NLFKTIKKQS
TITSGWLQLA QLEITAHPGF GYHELWRIMS NTIIAFSLLF LVAIFTARIG LTWILKPLHT
LSEHAKSIAA RQFGPDMALP KTTELKDLVT AFNSMSAQLK QVFHSLDEEV GALRKKNLVD
PASGLPNRQY VVSRLNGWLS EPSSGALFLA KLDWLEEVHS KYGYQVRDET IRILAEKFQL
QLNEITPSVI GRIAAYEFAF LVTDVEHDQI SKYLQTLIRT INQEMSKAGC KPNEDFAIGI
AERIGQMNVS DILAQADNAL QKALQENKTF HWFETTEQQL FTREQWRDNL SHAISNKKFK
FRWQPIQFCD GDGIAQRELY CQLELGDQLA HAGQFMPYIE LLSLGALLDK CLIETVYEQK
LLERSYEPLA INLTHQSIND PQFHEWLNHF LRNAAFIERI CFEIPEAGVY SDLKSCQHLC
NIIRDNGAKF GIDHFGRQFG SMSYLQELRP SYVKLDQSFA YYDETHHNSE LCRALINVAK
GLDIQVIVTG IQEKAQLERF NELRTDAYQG FIAPPVSLD
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