| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3930 |
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| Symbol | |
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| ID | 5370411 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 4670339 |
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| End bp | 4674832 |
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| Gene Length | 4494 bp |
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| Protein Length | 1497 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640832194 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001368116 |
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| Protein GI | 153002435 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATGAAG TAAGCCGTCA CATGCAAACA AAAATAATTA GAACAATTCT GACATGTTTC
ATCCTTTCAT TGACTTGCGT CCACTCGGCT TGGGCGGGCG GCTTTGTGCA GCGAGTGTTT
ACTGATAGGG ACGGTTTAGC GGTCACCAGT ATCCGAGGCT TGGCCTTAGA TGATTACGGT
TTTGTATGGG CCGCGACTGA GCAGGGCTTG TATCGAGTTA GTAATTCTAA GGTGCGGCGT
ATCGATAAAA TCGGCACCGA ATCGCGACTG TCAGATGACT TTTTAACCTC AGTAGTAAAC
ATAGAACGTG ACAAGTTATT GGTTAGCACC AACGCCGCAA TTTACCTCTA CGATATTGTC
CAAAATCAAT TTACCGCCTT TGGTTCTCCC TATTTATTCC CGCAGTTTCC CGGTGGTGCG
CTGGTCTCGG CAGCCCGAAA GAATAGTAAA ACATGGCGAT TATTAATTGA TAGTGGCCAG
ATTTATGAAT TCTCCCCTTC AAAGTCCGAA CTGCGCCTCA TTACTCAGTT GCCGGTTAAT
CGCGATCTTC CTTGGCGCAA ATTGCTGGTC ATGCCTAACG GTCAAATGCT GGTCGCGGGA
ACCTTGCAAT TAGAGTTGCT GGAGCAAAAT GGCGAGCGGG TGTTCCAATA CTCTTGGACT
GAATCTATGG GCAGTATTCT CGATATGTTA GAGGATTCTC AACATAGGAT CTGGATTGCG
ACCGGACGCG GCGTTTATCA ATTAGATCAA ATTTCTAGAC AAATTACCCC CGTGCCAGAA
TTGCCCGATT GGAGCACAGT GATCATTGAG GATGCTAAAG GGGATCTGTG GTTTTCCAGT
CGCATCGGTT TATTGAAATG GTCGCCCGAA ACGCGGCAGA TTGAAAACTA TCAAAAAGAG
TTGAAGGCTG AGGCCAACAT GGAAACGCTG AAAGCCATGT TGTTTGATGA TGCAGGTTTG
ATGTGGGTCG GAGGCTCAGG CGATGGGTTG GCTTTATTGG CGTCACAGCC TGATTTCATC
CTCGATACTT ATACTGGCGA TGAACCCTAT CAACTGAGCG ATGCCATGAC TTGGTCAGTG
CATGCCAGTG ATGAAGGCGT TTGGTTAGGT TCTTCCAGTT TAGATTTTAT TGCAAAAGGC
AGTAGCAAAG CGTTTAACGT GCCAATTGAG GGATTTAATC CCCATGAAAG TATTTACGAT
ATCAGTGCGT TTGAGGGGCA TTATTTACTG TTATCGACGA CCAGCGGCCT CTTTGTTGTC
GATAAAGACA CTTTGCAAGG CAGTAGCTTT TCTAAATGGA CTCACGGTAA TGATGATTTT
AAAAATAAGC TTATTTATAA AACCTATCGT GACCCCAAAC TGAAAGGACG TGTTTGGATT
GCGACGACAA CAGGGCTGTA TTTTTGGGAA ATGGGACTGT ACGAACCTCA GCCCTTTGAT
ATTGATAAGT CATCGAACAA GTTTGACGGC CCTAAGCGCC CCGTGATCCG CACTATTTAT
CGCACCTCCG ACGGTCGTTT GTGGGTGGGC GGTAAAAAAG TCTTTGGTTA CATCGACAGC
CAAAATGAGT TTCATGATCA GCGGCAGTTG TTTAATGCTT TTGCTGCACA ACCCACGGTC
AGTCACATTG AAGAAATGTC ACCTGGGGTG ATCTGGTTTG GCTCCTATGA AAAAGGTTTA
TTTGAATACC ATCAGCAAAC GGGATCGTTA ATTTCACTGA CCTCCGAGTG GCAATTAAAT
TGTAGTTCAG TGTTTTTTAT TCAAAAAACG CCCAAGTCTA ATCTTGTGGG CTGCTCGGAT
TCTTTGGTGC GACAGGATAT CCAAACGGGC GAGATTGCTA TGTTTAATCA ACTCGATGGT
TTAATTTCCG ATGAGATGAA CGAAGGCGCC TATTTTTACT CACCTAAAAC AGGCTTTTAC
TTAGGCACGC CCGAGGGCGT GATGCGACTC GATGTCGATA GGCTGGCCAA TCGCATTACC
GATGACCATG TGATGCTTGA ATCTGTCTCT GTGTACTATA ACAACACGAC CGAAGTGTCC
CTGTTGCCGC GTAACCTGAT GACCATAAAA CCCGAAGCCA ATATGGTCAG TTTTCAAATC
ACTAACTTAG ATTATCTCGA TGATTCGCCC ATCCAATTTA AATACCGATT ACGTTATCAA
GATGAAGAGA GTAATTATGT GCTGCTTCAG GGGGAGTCGC AGATTAACCT CGCAGGTTTA
GCTTCGGGTG GTTATGTTTT AGATATTTTA AGTCAGGTCA ATGGAATATG GTCCGATAAA
CCTTTTACCT ATCCCTTTTA TGTTGAGCAG CATTGGTGGT TATCCCAAGG TTTTAAAGGC
ATTTTACTGC TGTTATTTTC TATTATTGCC TTAAGTCTTG CTTGGTATCG GCAACGTCAG
ATCAATACCT TTAAGCAGAT GAATCAGGCA TTAACTGAGA GTGATGACAG GCTGAGGCAA
TCTTTGCGCG GTAGTGACTC GGATCTCTGG GAATGGCATA AAAATACTCA GGCATTTCAT
CTTGATAATC GCGGTGCCGT TCTCGGTACC CATGCCAATG AGATTGTTGT GAGCTTAGCA
GAGTTGCCTG TGCATCCACA GGATAGGGAA AAAGCGCTCG CTCAGTGGGA TAGCATGATA
TCGGGGGAGA TAGATAGATT CGAAGCCGAA TATCGTTATC AGCGCAAGGA CGGTAATTGG
GGCTGGTTAA GGGTAAGAGG GCGGCCCGTT GCCCGTAATA AGCACTCCAA TGAGATTGAG
CGGGTCGCGG GTATTTATAG TGATATTACC GTGCAACGAC AGTTAGAAGA TGAAGTGAAT
TTACTGGCAA AAGCGTTTGG TAACACATCT GAAGGTGTAC TGATTTTAGA TGTCGAAGGC
AGTATTCGCG TGGCGAATTA CGCGGCACAA CAGATTATTG GTATCGATTC TACTGATTTA
GTTGGCCAAT CTTTTACCCA ATTTGTACAG ATGAATGACG GTTTGGCATC GGAAATTAAG
CAACTCCTCA GTGATAGCCA GTCTTGGACG GGCGAGCGTG AGTTAATTAA CGCCAGTCAG
CAACCCTGTC CTGTGTGGCT AAACGTATCT GTGATGCAAA GTGCCAACGG TAAAGTGACC
CATTATGTGG TGGTATTCTC GGATATTACC GAACGTAAAC AAACCGAAGC CGATTTACGC
CGCCTAGCCA ATTACGATGT GCTTACGGGA TTGCCAAACC GCTCCTTATT TTCTAGTCGC
CTATTACAGT CGATTCAGGC CGCGCAGCAA ACGGGCGAGA AATTGGCGCT ACTGTTCTTG
GATCTCGATA GATTTAAGCA TGTTAATGAC TCCTATGGTC ATAGCATGGG CGATGCCTTA
CTGGTCGAAG CCTCAAGCCG ACTACAATCC TGTATTGCTA GCGAGCATAT GCTCTGCCGC
TTTGGCGGCG ATGAATTTGT GATTTTACTC AGAAATGCCA ACAGCATTGA TGATATCAAC
CACATTGCCG AGCGGCTGCT GGAACAAATC GTGGCGCCTT TTAAGTTATA TGGCCGTGAG
TTTTATATTT CGACCAGTAT TGGCATCAGT ATTTGGCCCG ACGATGCGGT TCAGCCTGAA
GCCTTTATCA AGAATGCCGA TCTCGCTATG TATCACGCCA AAGAAGAAGG GCGGGGAAAT
TTCCAATATT ATTCCTCTGA GCGTAATGCC CAAGCCCTCT ATCATTTACG GCTTGAGGCC
GATTTACGTA AAGCCATAGA GCGGCAAGAG TTCGAGCTTT ATTACCAGCC GCAGATTGAT
ATTTTACGTA ACGATAAGCT CATAGGAATG GAAGCATTAA TTCGCTGGAA ACATCCGCTG
GACGGCTTTA TTCGTCCCGA TATTTTCATC AAAGTCGCCG AGGCTTGCGG TTTAATTGTC
GATATTGACC GCTGGGTGTT AAGGCAAGCC TGTGTGCAGG GAGCACATTG GGCGAAACGT
TATGGCTCTA CCTTTAAGTT GTCGGTTAAT ATTTCGGCGG TGCATTTCAG GCAGCCAGAT
TTTATTGAAG ACATACAAAG CATTCTGCAT GAAACCCAAA TGCCGACGGC GTCTTTAGGC
TTAGAAATCA CTGAAGGCGT GTTGATGAAA GAGTTGCACG TCGCTAAAGA TCATCTCTCG
CGATTGAAGT CCTTGGGGAT TGAAGTTGCC ATTGATGACT TTGGGACAGG TTATTCTTCT
CTGGCTTATT TACGCCATTT TGAGGTGAAT ACCTTAAAAA TCGATCGCTC CTTCTTGATT
GATATCGCCA CCAATAAGGC CGATCAGGCG ATTGTGAGCA GTATTATTGA ATTAGCCCGC
AACCTTAAAT TAAATGTGGT TGCCGAAGGG ATTGAGACGG TTGAGCAGTT AGAGCAAGTA
TTTAGCCGCG GCTGTTATAT TATTCAAGGG TATTATTTTG CTAAGCCTAT GTGCGTGGCT
GATTTTGAAC GTTATTTAGA AACAGACAAC AGAATCGTCG CTATTGAGCA TTAA
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| Protein sequence | MYEVSRHMQT KIIRTILTCF ILSLTCVHSA WAGGFVQRVF TDRDGLAVTS IRGLALDDYG
FVWAATEQGL YRVSNSKVRR IDKIGTESRL SDDFLTSVVN IERDKLLVST NAAIYLYDIV
QNQFTAFGSP YLFPQFPGGA LVSAARKNSK TWRLLIDSGQ IYEFSPSKSE LRLITQLPVN
RDLPWRKLLV MPNGQMLVAG TLQLELLEQN GERVFQYSWT ESMGSILDML EDSQHRIWIA
TGRGVYQLDQ ISRQITPVPE LPDWSTVIIE DAKGDLWFSS RIGLLKWSPE TRQIENYQKE
LKAEANMETL KAMLFDDAGL MWVGGSGDGL ALLASQPDFI LDTYTGDEPY QLSDAMTWSV
HASDEGVWLG SSSLDFIAKG SSKAFNVPIE GFNPHESIYD ISAFEGHYLL LSTTSGLFVV
DKDTLQGSSF SKWTHGNDDF KNKLIYKTYR DPKLKGRVWI ATTTGLYFWE MGLYEPQPFD
IDKSSNKFDG PKRPVIRTIY RTSDGRLWVG GKKVFGYIDS QNEFHDQRQL FNAFAAQPTV
SHIEEMSPGV IWFGSYEKGL FEYHQQTGSL ISLTSEWQLN CSSVFFIQKT PKSNLVGCSD
SLVRQDIQTG EIAMFNQLDG LISDEMNEGA YFYSPKTGFY LGTPEGVMRL DVDRLANRIT
DDHVMLESVS VYYNNTTEVS LLPRNLMTIK PEANMVSFQI TNLDYLDDSP IQFKYRLRYQ
DEESNYVLLQ GESQINLAGL ASGGYVLDIL SQVNGIWSDK PFTYPFYVEQ HWWLSQGFKG
ILLLLFSIIA LSLAWYRQRQ INTFKQMNQA LTESDDRLRQ SLRGSDSDLW EWHKNTQAFH
LDNRGAVLGT HANEIVVSLA ELPVHPQDRE KALAQWDSMI SGEIDRFEAE YRYQRKDGNW
GWLRVRGRPV ARNKHSNEIE RVAGIYSDIT VQRQLEDEVN LLAKAFGNTS EGVLILDVEG
SIRVANYAAQ QIIGIDSTDL VGQSFTQFVQ MNDGLASEIK QLLSDSQSWT GERELINASQ
QPCPVWLNVS VMQSANGKVT HYVVVFSDIT ERKQTEADLR RLANYDVLTG LPNRSLFSSR
LLQSIQAAQQ TGEKLALLFL DLDRFKHVND SYGHSMGDAL LVEASSRLQS CIASEHMLCR
FGGDEFVILL RNANSIDDIN HIAERLLEQI VAPFKLYGRE FYISTSIGIS IWPDDAVQPE
AFIKNADLAM YHAKEEGRGN FQYYSSERNA QALYHLRLEA DLRKAIERQE FELYYQPQID
ILRNDKLIGM EALIRWKHPL DGFIRPDIFI KVAEACGLIV DIDRWVLRQA CVQGAHWAKR
YGSTFKLSVN ISAVHFRQPD FIEDIQSILH ETQMPTASLG LEITEGVLMK ELHVAKDHLS
RLKSLGIEVA IDDFGTGYSS LAYLRHFEVN TLKIDRSFLI DIATNKADQA IVSSIIELAR
NLKLNVVAEG IETVEQLEQV FSRGCYIIQG YYFAKPMCVA DFERYLETDN RIVAIEH
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