| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3859 |
|---|
| Symbol | |
|---|
| ID | 5373061 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 4576567 |
|---|
| End bp | 4578048 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640832120 |
|---|
| Product | UbiD family decarboxylase |
|---|
| Protein accession | YP_001368046 |
|---|
| Protein GI | 153002365 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
|---|
| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTA AGGATTTACG CAGCTTTATT GATCATCTGG AAGCCAATGG CGAACTCAAA
CGCATTAGCT ACCCAGTTGA TCCTCATTTA GAAATGACAG AGATCGCCGA TCGCGTATTA
CGCGCTAAGG GCCCTGCGCT ATTATTTGAA AATCCCAAAG ATCATCACAT GCCCGTGTTG
GTAAACCTGT TCGGTACGCC AAAACGTGTG GCCATGGCGC TAGGTAAAGA CGATCCCTTA
GCGTTGCGCG AAGTGGGTGA ACTGTTAGCC TTTTTAAAAG AACCCGAACC ACCACGGGGC
TTTAAAGACG CGATCGCTAA GATCCCTATG TTCAAGCAAG CCTTGAATAT GCCGCCAAAG
ACAGTGCGCA ATCCCCCTTG CCAACAAGTG ATCAAAACCG GCGATGAAGT CGATTTGACC
CAATTACCTA TTCAGCATTG CTGGCCGGGC GATGTCGCAC CACTGGTGAC ATGGGGCTTA
ACCATCACCA AAGGCCCGCG CAAGAGTCGC CAGAATTTAG GTATTTATCG CCAACAATTA
CTGGGTAAAA ACAAGCTGAT CATGCGCTGG TTATCCCACC GCGGCGGCGC GTTAGACTTT
GCTGATTTTA AACAACAATT CCCCGGTGAA CGTTATCCTG TTGTCGTCGC ACTCGGCGCC
GATCCTGTGA CCATTTTAGG TGCCGTCACC CCAGTCCCAG ATTCCATGAG CGAATACGCT
TTTGCCGGTT TACTGCGCGG TGAACGTACC GAAGTCTGCA AGGCATTAAG CTGCGACTTA
GAAGTGCCCG CCACCAGTGA AATCATCCTC GAAGGTTATA TCGGTCCTGA AGAACTGGCG
GAAGAAGGCC CCTACGGCGA TCACACGGGT TACTACAACG AAACCGATAA GTTTCCAGTA
TTTACCGTTA CCCACATCAC TCACCGTAAA GATGCCATCT ACCACAGCAC TTACACAGGC
CGTCCACCGG ATGAGCCCGC CATGCTTGGA GTTGCATTAA ACGAAGTGTT TGTGCCGATT
TTGCGTAAGC AATATCCTGA GATCGTTGAT TTTTATCTGC CGCCTGAGGG TTGTTCGTAC
CGCATGGCAG TGATCTCCAT TCGCAAACAA TATCCGGGAC ACGCCAAACG GGTGATGATG
GGCGCTTGGT CTTTCCTGCG CCAATTTATG TACACTAAGT TTATTGTCAT AGTGGATGAA
GATGTGAACT GCCGTGACTG GCAAGATGTG ATCTGGGCGA TCACCACCCG TATGGACCCT
AAACGCGATA CCGTGATGAT CGAAAACACC CCGATCGACT ACCTCGATTT TGCCTCACCC
GTCGCGGGCT TAGGCTCAAA AATGGGACTC GATGCCACTA ATAAGTGGGA AGGCGAAACC
AACCGCGAAT GGGGCACGCC AATCGTGATG GATCCAAAAG TAAAACAAAA GATCGACTCA
ATCTGGGATG AGTTAGGCAT AGACGACAGC CCAACCCTAT AA
|
|---|
| Protein sequence | MSFKDLRSFI DHLEANGELK RISYPVDPHL EMTEIADRVL RAKGPALLFE NPKDHHMPVL
VNLFGTPKRV AMALGKDDPL ALREVGELLA FLKEPEPPRG FKDAIAKIPM FKQALNMPPK
TVRNPPCQQV IKTGDEVDLT QLPIQHCWPG DVAPLVTWGL TITKGPRKSR QNLGIYRQQL
LGKNKLIMRW LSHRGGALDF ADFKQQFPGE RYPVVVALGA DPVTILGAVT PVPDSMSEYA
FAGLLRGERT EVCKALSCDL EVPATSEIIL EGYIGPEELA EEGPYGDHTG YYNETDKFPV
FTVTHITHRK DAIYHSTYTG RPPDEPAMLG VALNEVFVPI LRKQYPEIVD FYLPPEGCSY
RMAVISIRKQ YPGHAKRVMM GAWSFLRQFM YTKFIVIVDE DVNCRDWQDV IWAITTRMDP
KRDTVMIENT PIDYLDFASP VAGLGSKMGL DATNKWEGET NREWGTPIVM DPKVKQKIDS
IWDELGIDDS PTL
|
|---|
| |