| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3641 |
|---|
| Symbol | |
|---|
| ID | 5373112 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 4324282 |
|---|
| End bp | 4325187 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640831899 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001367829 |
|---|
| Protein GI | 153002148 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAAC TAAGACATCT GCGAACCTTA ATGGCCCTGA AGGAAAGTGG CAGTTTGGCG
GGCGCAGCCA AAAAACGTTT TGTCACTCAA TCCGCCCTCT CCCACCAAAT TAAGGAGCTG
GAGCAAAGGA TTAACTCGCC CATTTTTGTG CGTAAGAGTA AGCCGCTGTC ATTCACCCAA
GAAGGTGCAC GCCTGCTTCA TCTCGCGGAA GAGATTTTGC CTAAGGTGTT AGAAACCGAG
ACAGATCTTA AGAATGGCCT TGAAACCGAA ACCAATCAGT TGCGGGTAGG CATTGAGTGC
CACAGCTGTT TTCGCTGGTT AATGCCAGTG ATGGAGCAAT TTAGGCAAGA CTATCCCCAA
GCGGAGTTAG ATCTGTCGAG CCGTCACTTG TTCGACTCGC TCAATGCCTT GGAAATGGGT
GAACTGGATA TAGTGCTGAC CTCAGATCCT GTGCCTGGGC ATTCACTCGC TTATCAGCAT
TTGTTTGATT TTGAAGTAAA GTTAGTAGTT GCTAAGGATC ATCCTTTAGC GAAAGAAGCC
TATGTCACCC CTAAGCAATT AGCACACTTG CCTATTATCA GTTATCCCGT ACCACTGACG
CGTTTAGACA TCTATCGCCA CTTTTTAGAA CCCGCAGGCA TAGAAGCGGG CGAGCAGAAA
ACCTGTGATT TAACCATGAT GTTACTGCAA CGCATCGCCT GTAAAGACGG TATAGCCGCG
CTGCCAAATT GGTCGATAAA TGAAGGGCAT GGCCTAAGCC TTACCACAGT GAAGCTCGGG
CAAGAAGGCT TGAAACGCCC TTTGTTTGGC GCCTATCGCC GCCATAGCGC CAACTCAGCA
TTGATCCAAA ATTGGTTACA ACTGGTGGCG AGTGAAGGTT TATCCCGCCA GCAGAAGCCA
AATTAA
|
|---|
| Protein sequence | MIELRHLRTL MALKESGSLA GAAKKRFVTQ SALSHQIKEL EQRINSPIFV RKSKPLSFTQ
EGARLLHLAE EILPKVLETE TDLKNGLETE TNQLRVGIEC HSCFRWLMPV MEQFRQDYPQ
AELDLSSRHL FDSLNALEMG ELDIVLTSDP VPGHSLAYQH LFDFEVKLVV AKDHPLAKEA
YVTPKQLAHL PIISYPVPLT RLDIYRHFLE PAGIEAGEQK TCDLTMMLLQ RIACKDGIAA
LPNWSINEGH GLSLTTVKLG QEGLKRPLFG AYRRHSANSA LIQNWLQLVA SEGLSRQQKP
N
|
|---|
| |