| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3592 |
|---|
| Symbol | |
|---|
| ID | 5372819 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 4271128 |
|---|
| End bp | 4272519 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640831850 |
|---|
| Product | UDP-N-acetylmuramate |
|---|
| Protein accession | YP_001367780 |
|---|
| Protein GI | 153002099 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
|---|
| TIGRFAM ID | [TIGR01081] UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.421536 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACGTAC ATATTTTAGG AATTTGTGGA ACCTTCATGG GTGGTCTAGC GTTATTGGCT
AGGGCAAAAG GGCACAGAGT GACGGGCTCG GATGCCAATG TCTATCCTCC AATGAGCACG
CAACTAGAGG ACCAAGGCAT TGAGCTTATT CAAGGTTTTG ATCCCAGCCA GCTGGGTGAA
GCAGGGCATT ATCCTGACTT AGTTGTCATT GGTAATGCCA TGAGCCGGGG TAATCCCTGC
GTGGAAGCCG TGTTGAACAT TGGCATCCCT TATACCTCTG GCCCGCAGTT TTTAGCCGAT
CATATTTTGC CTGAGCGTTG GGTACTGGCA GTGTCTGGCA CTCACGGTAA AACCTCGACT
TCTAGCATGT TAGCCTGGAT TTTAGATGAT TGTGGTTATG AGCCTGGGTT CTTAATTGGT
GGTGTACCGC AAAACTTTGG TGTGTCGGCG CGTTTAGGCA AGACGGCTTT TTTTGTGGTT
GAGGCCGACG AATACGACAG TGCCTTCTTC GATAAACGTT CGAAATTCGT GCATTATCAT
CCACGTACCT TAGTGATCAA CAATCTTGAG TTCGATCATG CCGATATTTT TGCCGATCTG
GCTGCGATTC AAAAACAGTT TAATCATTTA GTTCGCACTG TACCTGGCGA AGGAAAGATC
GTTTGGCCTG CCGATTCCCA TGCTGTTAAG CAGACGATTG ATATGGGGTG CTGGAGCGAG
CAAGAAACCT ATCATTTAGC CGAATCGACC AGCGGTTGGT ATGGCAAAGC CTTAAGTGAT
GATTGCCATC GCTTTGAAGT GTTTTTTGAT GGCGAGTCCC AAGGTATTCT CGAATGGGAT
TTGATTGGTC AGCACAATAT TGAAAACGCC ATGATGGCCA TTGCTGCTGC GCGTCACGTG
GGCGTTAAGC CGAGTGCTGC AATTGAAGCC TTAGCTAAGT TTATGCCACC TAAACGTCGA
CTCGAATTAC TCGGAACCGT TAACGGCGTG AGCGTTTACG ACGACTTTGC CCACCATCCA
ACGGCGATTG CGACCACGTT AAAAGGCATG CGGGCTAAGG TCGGTCAGAG CAAGATTACT
GTGGTACTCG AGCCGCGCTC AAACACCATG AAGAGCGGTG TCCATAAAGA CACTTTAGCT
TTTTCTATGA TGCAAGCCGA CGAAGCCTTT TTATATCAAG CCGATACCAT CGACTGGAAC
ATGAAAGAAG CCATGGAAGC GGCGGTGATC CCTGTGACTG TGTTACATCA AATTGATGAT
GTGGTCGCCA AAGTAACGGC AACGGCCAAA GCGGGCGACA CCATAGTGGT GATGAGTAAC
GGCGGTTTTG GCGGGTTACA TAAGAAGCTG CTGGCCGCAT TAGAGCTGCG TTCAACTGTA
GAGCAGGTTT AA
|
|---|
| Protein sequence | MHVHILGICG TFMGGLALLA RAKGHRVTGS DANVYPPMST QLEDQGIELI QGFDPSQLGE
AGHYPDLVVI GNAMSRGNPC VEAVLNIGIP YTSGPQFLAD HILPERWVLA VSGTHGKTST
SSMLAWILDD CGYEPGFLIG GVPQNFGVSA RLGKTAFFVV EADEYDSAFF DKRSKFVHYH
PRTLVINNLE FDHADIFADL AAIQKQFNHL VRTVPGEGKI VWPADSHAVK QTIDMGCWSE
QETYHLAEST SGWYGKALSD DCHRFEVFFD GESQGILEWD LIGQHNIENA MMAIAAARHV
GVKPSAAIEA LAKFMPPKRR LELLGTVNGV SVYDDFAHHP TAIATTLKGM RAKVGQSKIT
VVLEPRSNTM KSGVHKDTLA FSMMQADEAF LYQADTIDWN MKEAMEAAVI PVTVLHQIDD
VVAKVTATAK AGDTIVVMSN GGFGGLHKKL LAALELRSTV EQV
|
|---|
| |