| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3583 |
|---|
| Symbol | |
|---|
| ID | 5372958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 4261570 |
|---|
| End bp | 4262247 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640831841 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_001367771 |
|---|
| Protein GI | 153002090 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGATT TTATTTACCA ACCACCGACA ACTCCTTGGC TCGATATTCT TTATCAAGAT
AAAGACATTA TCGTCATAAA CAAACCTTCG GGATTGTTGT CTGTGCCCGG TCGCGATCCT
GCCCATTACG ACAGTGTCTA TGCTCGGGTA AAAGCTGAAC ATCCCCATAG CCAAATCGTC
CACCGCCTCG ATATGGCGAC CTCAGGCGTG ATCGTTGTCG CCCTTATTCG TAGCGCCGAG
CGTGAGTTAA AACGTCAGTT CCACGATAGA GAAACCAGCA AGACCTACTT TGCAAGGGTC
GCTGGACATG TCAAAAATGA CACTGGTAGC GTTGATTATC CGCTGATCTG CGACTGGCCA
AATCGCCCAA AACAGAAAGT CGATCATCTT GTGGGTAAAC CGTCTTTAAC TCACTACCAA
GTAATAAGTC GTGCCAAACG CTCGACGCTG GTGAAACTCA CGCCAATCAC AGGCCGCTCA
CACCAATTAC GCGTGCATAT GATGGCACTA GGTCATCCGA TCTTAGGTGA TGGTTTTTAT
GCCGATCCAC TAGCCAAATC CTTAGCACCA CGCCTATTAC TGCATGCGGC AGAGCTCACC
ATCAAACATC CTTACACGGG TGTCAGTATG ACTTTTAGCG CAGAAGTACC TTTTTGTGAG
CCTTTGGGCG AACAATGA
|
|---|
| Protein sequence | MTDFIYQPPT TPWLDILYQD KDIIVINKPS GLLSVPGRDP AHYDSVYARV KAEHPHSQIV
HRLDMATSGV IVVALIRSAE RELKRQFHDR ETSKTYFARV AGHVKNDTGS VDYPLICDWP
NRPKQKVDHL VGKPSLTHYQ VISRAKRSTL VKLTPITGRS HQLRVHMMAL GHPILGDGFY
ADPLAKSLAP RLLLHAAELT IKHPYTGVSM TFSAEVPFCE PLGEQ
|
|---|
| |