| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3509 |
|---|
| Symbol | |
|---|
| ID | 5371775 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 4173447 |
|---|
| End bp | 4176161 |
|---|
| Gene Length | 2715 bp |
|---|
| Protein Length | 904 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640831769 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001367699 |
|---|
| Protein GI | 153002018 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGCT CCGCAGTAAT GACTTCAATG GCAATATCCC TAGCCAGCAT GGCCACTTTT
TCAGGGTTAG CAGCCGAAGC CGAAACTGAA GCAATGTTGC CAGCATCTGC AATTAAACCT
CAAGTATCGA CTCCCACGGC TATGGAAAGG ATTGCCATTA CAGGGAGCCG AATTCAAAGG
GAAGAGATGG CTTCCACCGC GCCTATGACC GTTTTTACCG CGCAAGATAT CGAGAAAACC
GGTGCCACTT CAGTTGAAGT ATTGCTGCAA AGAATGACAG CCTCTGCGGG GTTTGCGGGT
AATCAAACGA ATGCCTATTG GACTGAAGGT GGCTATGGTT CAACCCAAGT CAACCTGCGT
GGATTAGGGG TGAATCGCAC ACTCGTACTG CTCAATGGTC GACGTATGCT GAACAGTGGC
ACTGGGGCAA ACTCCTCCGT GGATCTTAAT ACCATTCCCA TTAGCGTGGT TGAACGAATC
GAGGTCTTAA AAGATGGCGC ATCCGCCATT TATGGTGCCG ACGCGGTTGC AGGCGTGGTC
AATATCATCA CTCGGCAGCA AATCGAAGGG GTTGAGTTTC AAGCACGAAC GGGCATAACC
GAGCAAAATG ATGGTGGACA GTACAAGCTC GACCTTGCCC TCGGTCATGT CGGTGAGCGT
GGCAGTGCAT ATGTGGCGAT GAGTTACGAT AAAACCCAAG CCGTCGATAT GCTGAGTCGC
GCACCTTGTC CGCTTGAAGA AGTTAATGGT GAGCTAGTGT GTGGCGGTAG CTCGGCGCTG
CCGGGAGGCA GAGGCCATTT CATTGATACC AATGGTAATC CAATCGGCGA TCCGTTAATG
CTGTTGCCAA CAGGAAGTGC CCCTTACACA AGCAGCCATA AAGACAATAC TTATCAGTAT
TTTAATGCGG TCCAACCTAA CGAGCGAGTC AATCTGTTTG CCTACGGTGA ATATGACTTA
ACGGCAAGCA GCCAAGTGTT TGCTGAGGCC ATGTACACTC ACCGTAGCTC ACAATTACCC
GCTACCCCGC AATCCGTGTC AGGAATAGTC ATTCCTGCTT GGCATGAGTC AAATCCGACC
GATTCAGACT TTCTGCTCCA GAGTCGCAGA CTGGCTGAAG CGTCCCGACA ATTTAATATT
CAAGCAGATA CTTGGCGCTT AGTGACAGGA TTAAGAGGGG ATTTAGACAA CGGTTGGCAA
TGGGATGCTG CGGTTAACTT CGGCAGTAAC CGTGGCTCCT ATGAAGTGAC CAATGTCATT
AATAATACTC GTCTTGCCGA TGCGACAGAC TATAGCAATT GTAATATTGA TCCTAATGTC
CCTTGCGCAA ACTTTTGGGG AGCTGGCTCA CTCACACCTG AAATGCTGGA CTATTTTCTG
TTTAACATGC GTGATAGCGG CGGTAATGAG CAGTTTAGTC TCACAACGAA TATCACAGGC
GATCTATGGC AGTTACCCGC GGGCATGATG AGTTTTGCTG CAGGACTAGA GCACAGAAAC
GAGAAAGGAT GGAATGACCC CGACCCACTT AAAATCAGTG GTGAAGCAAA CACTGCCCAG
CAAGATCCGA TTGATGGTCG TTATACTGCC GACGAAATCT ATCTTGAAAC CTTATTACCT
ATTTTAAGCG GCCTGCCCTT TGCCAAGTCG GTCGAATTAA CTGCGGCGTT GCGATATTCC
TATTTTGATA CCTTCGGTGG TGATACCAAT TATAAAATGG GGCTACTGTG GGTCATCAAT
GACGCAGTGA CGCTGCGGGC CACACAATCC ACGGCATTCA GAGTACCGAA TATTCCTGAG
TTGTTTGGCG GCATAGATCA AGGCTCCATG AATACCACAG ATCCTTGTAG CGAGTGGGTT
AAGCTCGACC CTAGCTCGAA TCGATACGCT AATTGTATGG CATCAAACGT GCCAACGAAT
TATAAGCAAG AAGGCACAAT ATTAACCGAC CGTGGTGGCA ATGCTGAACT TGAACCAGAA
GAAGCCAATA CCTTTACTGC GGGTATTGTT TGGGATCTGG AATTTATTGA AGGGCTCAAT
ATCACGCTCG ATTACTACAA GATAGAGATT AATAACGCCA TTAACTCAGT CAATGGTTCG
AGCAAATTAG CCGCCTGTTA CGACAGCAAA GGGATGACGC ATCCTTTCTG TAGCGACGAG
CACTTTGTGC GAGACGCAAT GACAGGCAAC ATCACCTATT TACAAACACA ACTGGGCAAC
GCCGCCAACG AAGTGGTTTC AGGTGTTGAT ATGGCGATGT TTTACCAGAA AGAGATGGGC
AACGTTGTGA CTAATACGAC TTGGGAGCTG AGCTATTTAG ATCAATACGA TCTGCAAACC
TACGCCGGTG CCCCCGTTGA ATCACGAGCT GGCACCATTG GTTATGATGG TAGCTACACC
AAATGGCGCT CAAACCTCTA TTTTGATGTC ACTAATGACA ATTGGCGCTT TAGCTACAAC
ATTCAATATA TCGGCGCGGC GGATGATCAA TATGCCAATG CCGGAGAGAT AGGTGACTCA
GTTGATGCGC TCACTTACCA TAACGCACAG GTTCATTATC AAATGGACAG CAATATTGCG
TTCACAGCAG GTATCGATAA TCTGTTCGAC AAGCAAGCGC CATATCATCA AAGCTATACC
GACGGTAATA CCAACACTAT GACGTACGAC CTAATGGGAC GTCGTTACTA TATCGGGATG
AAATGGGCTC TGTAG
|
|---|
| Protein sequence | MTRSAVMTSM AISLASMATF SGLAAEAETE AMLPASAIKP QVSTPTAMER IAITGSRIQR
EEMASTAPMT VFTAQDIEKT GATSVEVLLQ RMTASAGFAG NQTNAYWTEG GYGSTQVNLR
GLGVNRTLVL LNGRRMLNSG TGANSSVDLN TIPISVVERI EVLKDGASAI YGADAVAGVV
NIITRQQIEG VEFQARTGIT EQNDGGQYKL DLALGHVGER GSAYVAMSYD KTQAVDMLSR
APCPLEEVNG ELVCGGSSAL PGGRGHFIDT NGNPIGDPLM LLPTGSAPYT SSHKDNTYQY
FNAVQPNERV NLFAYGEYDL TASSQVFAEA MYTHRSSQLP ATPQSVSGIV IPAWHESNPT
DSDFLLQSRR LAEASRQFNI QADTWRLVTG LRGDLDNGWQ WDAAVNFGSN RGSYEVTNVI
NNTRLADATD YSNCNIDPNV PCANFWGAGS LTPEMLDYFL FNMRDSGGNE QFSLTTNITG
DLWQLPAGMM SFAAGLEHRN EKGWNDPDPL KISGEANTAQ QDPIDGRYTA DEIYLETLLP
ILSGLPFAKS VELTAALRYS YFDTFGGDTN YKMGLLWVIN DAVTLRATQS TAFRVPNIPE
LFGGIDQGSM NTTDPCSEWV KLDPSSNRYA NCMASNVPTN YKQEGTILTD RGGNAELEPE
EANTFTAGIV WDLEFIEGLN ITLDYYKIEI NNAINSVNGS SKLAACYDSK GMTHPFCSDE
HFVRDAMTGN ITYLQTQLGN AANEVVSGVD MAMFYQKEMG NVVTNTTWEL SYLDQYDLQT
YAGAPVESRA GTIGYDGSYT KWRSNLYFDV TNDNWRFSYN IQYIGAADDQ YANAGEIGDS
VDALTYHNAQ VHYQMDSNIA FTAGIDNLFD KQAPYHQSYT DGNTNTMTYD LMGRRYYIGM
KWAL
|
|---|
| |