Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_3478 |
Symbol | |
ID | 5371783 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 4129531 |
End bp | 4130136 |
Gene Length | 606 bp |
Protein Length | 201 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640831738 |
Product | membrane lipoprotein lipid attachment site |
Protein accession | YP_001367668 |
Protein GI | 153001987 |
COG category | [R] General function prediction only |
COG ID | [COG3417] Collagen-binding surface adhesin SpaP (antigen I/II family) |
TIGRFAM ID | [TIGR02722] uncharacterized proteobacterial lipoprotein |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0966746 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACTGA CTATGAAACA ATTTAAACTG ATTTTTGTGC TGGCTGCCGT TATGGGTCTG GCTGCATGTC AATCTAAAGT CGAATATGGC GATGCCACCG AAGTTGAAAC CGTCAATGAG AACTTTGGCT CAACGGATCT ACAAGCTATT GCAGCCAAGA TGGTGGATAG CATGATGACT TTCCCTCCTA TCGTGGCCAT GACAGCCAAT AGCCGTCCGA TTTTATTTGT CGACAGCATC AAGAACAAAA CCTCAGAGCA TATTGATACT GAGTCTGTTA CTGACTCTAT CAGCAACAAA CTATTGCGCT CAGGCAAGTT CCGTTTTATC GACATGACTA AAGTAGATTC AGTCCGTAAG CAATTGGATT ACCAAAACAA CACTGGCATG GTTGATCCAT CAACCGCCAT CAAGTTTGGT CGTCAAATCG GCGCGCAATA CATGTTATAC GGCAATTTAT CTAGCATAGT TAAGCAAGAC GGTAGCACTA AAGACGTGTA CTACAAGATG ACAATGCGTT TAATGGATTT AGAAACTGGC CTGATCGAAT GGTCTGATGA AAAAGAAATC CGTAAGATGA AGTCTAAGTC TTTCTTAGGC ATGTAA
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Protein sequence | MELTMKQFKL IFVLAAVMGL AACQSKVEYG DATEVETVNE NFGSTDLQAI AAKMVDSMMT FPPIVAMTAN SRPILFVDSI KNKTSEHIDT ESVTDSISNK LLRSGKFRFI DMTKVDSVRK QLDYQNNTGM VDPSTAIKFG RQIGAQYMLY GNLSSIVKQD GSTKDVYYKM TMRLMDLETG LIEWSDEKEI RKMKSKSFLG M
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