Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_3476 |
Symbol | |
ID | 5371658 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 4127513 |
End bp | 4128070 |
Gene Length | 558 bp |
Protein Length | 185 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640831736 |
Product | peptide deformylase |
Protein accession | YP_001367666 |
Protein GI | 153001985 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00071133 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTTAAAC ATTTGATGCC AAAACAAACC CCGCCTTTAT TACCCATAGC GTTAGTGGGT GAAGCTATCC TAGGGCAGAC TGCAATTGCA GTGCATCATT TCGATGCCGA GCTCGCGCAC CTTGCAGAGC AAATGTCTGC CAGCATGGAA GCTGCCAAAG GCGTTGGCAT CGCGGCGCCA CAGGTTCACT GTCCCTTAGC CTTATTTATT ATGGCTTCTC GCCCTAATGA ACGTTATCCC GACGCACCCA ATATGGCGCC TGTAGTCGTG GTTAATCCAC AAATCATTCA TGCATCGAGT GACTTAGTCG GCGGCGAAGA AGGTTGCCTG TCCGTTCCCG GCCAAAGATT TAACATACTA AGACATCAAG CCATTGAAGT GCGCTACCAG AATTTACAAG GCGAGTGGCA ACAGGCCGAA TTAACAGGCT TTATTGCGCG GATTTTTCAA CACGAATTTG ATCACCTGCA AGGGATCACC TTACTCGAGC GTTCACGTAT GCCTGAACAG GCTCAGTCGA TTTCAGCCCA GTCCATCGAA CAAGGTGAAG CGCAATAA
|
Protein sequence | MFKHLMPKQT PPLLPIALVG EAILGQTAIA VHHFDAELAH LAEQMSASME AAKGVGIAAP QVHCPLALFI MASRPNERYP DAPNMAPVVV VNPQIIHASS DLVGGEEGCL SVPGQRFNIL RHQAIEVRYQ NLQGEWQQAE LTGFIARIFQ HEFDHLQGIT LLERSRMPEQ AQSISAQSIE QGEAQ
|
| |