| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3333 |
|---|
| Symbol | |
|---|
| ID | 5370571 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 3966089 |
|---|
| End bp | 3968683 |
|---|
| Gene Length | 2595 bp |
|---|
| Protein Length | 864 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640831592 |
|---|
| Product | membrane or secreted protein |
|---|
| Protein accession | YP_001367523 |
|---|
| Protein GI | 153001842 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAC TCACCAAATT AGCAGCAGTG CTTGCGTTAT CACCTTTGTT ACCGTTATTG
AGCGCGAGTG TTTTTGCGGC TGATGCGAAG GTTGAAGACG GAGTGTTGTA CCTAGACGAT
GGCAGTGAAG TGCGTAACTT TGGCGTGAAT TACTCTGCGC CATTTGCCTT TACCTACCGT
GCAATGGTTA AAAGCGGTGT TGATATGCAC GCCGCTATCG ATATGGATGT GGCGCATCTT
AAGCGTCTTG GTGTGACGGG CTATCGCGTG CACGTTTTTG ACAGAGAAGT TTCTGATGTA
AAAGGGAACT TAGTCGATAA TGTTCATCTA GAACTGCTGG ATTATTTACT GAATAAGCTT
GCCGCTAATG GTATTCGCGC CATTATTACC CCGATTGCGT GGTGGGGTAA TGGTTATCCA
GCGCCGGATA CAGAGACTCA AGGATTTGCT AATGGCTTTA CTAAAGCGCA GATGAATACC
GAGCCTAAGG CTATTACGGC AACGCACACT TATCTGAAAC AATTCTTTGC TCATAAGAAT
CGTTATAGTG GTGTGACCTA TGGTCAGGAT GCCAACATTA TTGCCTTTGA ATTGTTTAAC
GAGCCGAGTC ACCATGGCGA TGTTTATCAG AGTCAAAACT ATATCAATGG CTTAATTAAG
GTGAGCCATG AGAGTGGCGT AACGAAACCG CTGTTTTATA ACATTAGCGA GCAGGGCGAC
AACCCAGCCT TTGCAAAAGC GGTATGCGAT TCTAATATCG ATGGAATTGC CTATCAGTGG
TATCCGACTG GGCTGGTAAA AATGAGCCGC ATCAACAGCA ATACTTTGCC GAATGTTGCC
CATTACACTA ATCCTTTCGC CGATATTGAA GCTTGTAAGA CGAAGGCGAA AATGATTTAT
GAGTTTGATG CTGCAGATGT CACGGGCAGT GTTATGTATC CGGCAATGGC ACGCAGTTTC
CGTGAGGCAG GATTCCAATG GGCGACCCAG TTTGCCTACG ATTCAGCTGT GATTGCTAAC
AGTAATGCTG AGTACAACAC CCATTTTCTC AATCTGCTGT ATACCCCATC CAAAGCCATC
AGTTTTTTGA TTGCAGGTGA GGTATTCAGG CAAGTTCCCC GCGGTTTTGA GGGCGGTGCT
TATCCGCAAA GTAACCATTT TGCTGATGTG ACTTTAGATT ATGGCCACGA TGTCAGTGTA
TTAAATCAGC CAGCGCGTTT TTATTACAGT AATAGCACAG ATGAAAAGCC ACAAGCGCCT
AAAAAGCTTG AGCATATCGC TGGCGTTGGC AGTTCTGCGA TCGTTAATTA TGACGGCAAT
GGTAGCTACT TTTTAGATAA GCTCAGCGAT GGTTTATGGC AATTAGAAGT GTATCCCGAT
GCCTTAGCCC TAACCGATCC ACATCAGAAC TCGAGTTTAA AGCGTGAAGC TGTGCGTTTG
TATCAAGCTT CGCGGCATTT TAATCTGGCT CTGTCGGATT TAGGCCAACA ATATTGGCTG
CAAGGTGTCA ATCAAGGTAA TCGCGCTTCG CTACAAGCCA GCAAAGGCAC AGTGCAGTTA
ACGCCGGGCA AGTATTTAGT CGCTAAAAAT AAATCCTTAC TTGCTTCAAC TCAGTCCAAG
ATTGATGACC ATTATTATCT GCCGCCTATG CTGCATCAAA CCTTAGCCTT AGTGCACCAA
AATCTGCAGG CGCTGAATCA AGGTGATGCA CTCACCTTTA GCGCTAGCGT GATGGATGCC
AAAGCCATAG ATAAAGTTGA GCTTTATGTG CGCTATCTTG GTGATAGTGA GTTTAAGGTT
TATCCGATGG AGGCCCATGG CAGTGTCTAT CGTCAAACCC TCACTGATGT CAAAAACTGG
CAGCGAGCAG GGGCGATTGA GTATGCTTTT GTCGTGACTC AAGCTTCTGG TCAAACAAGC
TTCCCCGATA ATGCCGAGGG AAATCCGAAT GAGTGGGATT TTGTGAAGAG TAGCGGTGCA
GCTTTTTATC AATTTGAGTG GCGCGCGAAA GGCACTCCGG TGAGCTTGTT TAATGCTTCG
TTCGATAGGG ACAATTTAAT CTACCCACAA AATGCCCGTA GTGAATGGCG CTTTCAAAGT
GGTGTGCGCG ATCAAGGGCT TGGGTTACAG CTTTATATCC CAAGTCTAGT GACATCTACT
ACAAGTTCAG AGGCGGACAA TGTGCTCGTG CGTATCTCAC CCGCTAAGGA TAATGCGCTG
TCACAACGCA ACCTTAATGG ATACGATGCC GTTCAACTAC GTATCTATGC CGACCAAGCT
AATGAGCATG TGTCTGTCGC ACTGTTAAAT GAGCATGGGC TCGCCTATGG CGCGGTTGTG
ACATTGCAGG CTGGATGGCA ATCCATTACC ATGCCTGTAG TAGATTTATC ACCCATGCCG
ACTGTATTAA CAAAGGCTTA TCCTATGTTT ATGCCAATGA ATTATCCTCA TTCAGAACCC
TATACGTTCG ACGCTGAGGC GCTGAGCAAA TTACAGGGCG TGCAGTTGGG GTTTGTGGCA
AAGGATTATG AAATCAAGGC GAGGGATAAA GGCCATAATC TCGTCTTATC TGAAATAAAT
TTAATTAAGA GGTAA
|
|---|
| Protein sequence | MKLLTKLAAV LALSPLLPLL SASVFAADAK VEDGVLYLDD GSEVRNFGVN YSAPFAFTYR
AMVKSGVDMH AAIDMDVAHL KRLGVTGYRV HVFDREVSDV KGNLVDNVHL ELLDYLLNKL
AANGIRAIIT PIAWWGNGYP APDTETQGFA NGFTKAQMNT EPKAITATHT YLKQFFAHKN
RYSGVTYGQD ANIIAFELFN EPSHHGDVYQ SQNYINGLIK VSHESGVTKP LFYNISEQGD
NPAFAKAVCD SNIDGIAYQW YPTGLVKMSR INSNTLPNVA HYTNPFADIE ACKTKAKMIY
EFDAADVTGS VMYPAMARSF REAGFQWATQ FAYDSAVIAN SNAEYNTHFL NLLYTPSKAI
SFLIAGEVFR QVPRGFEGGA YPQSNHFADV TLDYGHDVSV LNQPARFYYS NSTDEKPQAP
KKLEHIAGVG SSAIVNYDGN GSYFLDKLSD GLWQLEVYPD ALALTDPHQN SSLKREAVRL
YQASRHFNLA LSDLGQQYWL QGVNQGNRAS LQASKGTVQL TPGKYLVAKN KSLLASTQSK
IDDHYYLPPM LHQTLALVHQ NLQALNQGDA LTFSASVMDA KAIDKVELYV RYLGDSEFKV
YPMEAHGSVY RQTLTDVKNW QRAGAIEYAF VVTQASGQTS FPDNAEGNPN EWDFVKSSGA
AFYQFEWRAK GTPVSLFNAS FDRDNLIYPQ NARSEWRFQS GVRDQGLGLQ LYIPSLVTST
TSSEADNVLV RISPAKDNAL SQRNLNGYDA VQLRIYADQA NEHVSVALLN EHGLAYGAVV
TLQAGWQSIT MPVVDLSPMP TVLTKAYPMF MPMNYPHSEP YTFDAEALSK LQGVQLGFVA
KDYEIKARDK GHNLVLSEIN LIKR
|
|---|
| |