Gene Shew185_3292 details

Gene Information

• Locus tag: Shew185_3292
• Symbol: secD
• ID: 5371667
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS185
• Kingdom: Bacteria
• Replicon accession: NC_009665
• Strand: -
• Start bp: 3922841
• End bp: 3924655
• Gene Length: 1815 bp
• Protein Length: 604 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640831544
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001367482
• Protein GI: 153001801
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.0203863
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAAGAA AACCCAATAA ACGGCTGCTA AATCACTATT CAGCTTGGAA ATATATAGTT 
CTTATCGTCA CCATCATTGT GATGTTATTC AGTGCCTTGC CGACATTTTA TGGTGAGAAT 
GCCGCGGTGC AAGTGGGCGC TAAGGCTGGG TTAACACTTA CGCCCGTAGC CCTTAGAGAT 
AAGCTGCAAG CTGAAGGCGT GACGGTAAAA CGCATCGACC AAAAAAATGG TGAAACCTTA 
ATTGTCCTCG ATGCGGATAA CCAACAAACC TTAGTCAAAA CCTTGGTTTC GTCTATGGTG 
ACAGAGCCAA AAGAGTTGAC CTTATCCTTT GCCAGTGCCG CGCCGAGTTG GTTGCAAAAC 
TTAGGTTTTC AGCCGATTAA ACTAGGGCTC GACTTACGTG GTGGGGTGCA GTTTCTACTC 
GATGTGGATG TTGACCCTGT GTATCAAACT CAGGGTGAGG CGTTAGTTGA TTCGCTACGT 
CAATTCATCC GTGAGCAGAA GATCCGTGGT GCCAGCGTCT ATTTGGACCA AACTAACCAG 
TTAAACCTGA CGCTGCCCGA TAATGACGCC CGCGCCGCCG TGCGTCAGAT GATGAAACAG 
TCCTATCCAA ATTGGCAATT ATCCAATACC GATGGCGCGG GTTTACAGAT TAAGTTGAGT 
CAAGAGGAAC AAACTAAACT GCGTAATTTG ACTGTGCAGC AAAACTTGCA AGTTATGCGC 
AGTCGTATTG AAGAACTTGG CATAACAGAA GCCTTAGTAC AGCGCCAAGG CGATCATCGA 
ATTCGGATTG AGTTGCCTGG CGTGCAAGAT CCTGCAGCCG CGAAAAACGT CATTGGTGCT 
ACAGCGAGTC TGGCTTTTTT CGAGGTGAAA GAGTCAGGCT CTGTGAATGC CATGGTGCTT 
AACGATAAGT CGGGTAAGCC TATTTATGTG AGCCGCACGC CTGTGCTGGG TGGCGATCAC 
ATTGTCGATG CCAGAGCGAG TTTAGGTGAG ATGGGTATGG CCGAGGTAAA CATTAACCTC 
GACCGTATCG GCGGGCAGAA AATGTCTGAG TTTTCCCGAA CCAATATTGG CAAACCTATG 
GCGACGTCTT ACAGCGAATA CAGTCGCGAT GAACTAGGTA AGGCTAAGCA AACTCAAGAG 
ATTATCAGCG TTGCGACCAT TCAATCCCAG CTTGGAGACC GCTTCCGCAT TACTGGTGCG 
GGCACCTATC AAGAAGCGCA ACAATTAGCC CTGTTACTGA GAGCGGGCTC TATGACGGCG 
CCAGTGACGA TTGTAGAAGA GCGCACTATT GGCCCGACGT TAGGTGCTGA AAACATTGAA 
AACGGTTTTG CTGCGCTTGG TCTAGGTATG GGGATTACCT TGTTGTTCAT GGCGCTTTGG 
TATCGTCGTC TCGGTTGGGT AGCGAATATC GCGCTGATCT CTAACATGGT GATCTTGTTT 
GGCCTACTGG CGCTTATCCC TGGTGCTGTG CTGACCTTAC CCGGTATTGC TGGCCTAGTG 
TTAACCGTGG GTATGGCTGT CGATACCAAC GTGCTGATTT TTGAGCGAAT AAAAGACAAG 
TTAAAAGAAG GTCGCAGTTT TGCGCTGGCA ATTGATACAG GGTTTGATAG TGCGTTTTCG 
ACCATTTTCG ACGCTAACTT CACCACTATG ATCACTGCTG TCGTGCTGTA TTCCATCGGT 
AATGGCCCAA TTCAAGGTTT CGCCTTGACC TTAGGTCTAG GTCTGTTGAC CAGCATGTTT 
ACCGGTATCT TCGCTTCAAG AGCCTTGATT AACTTAGTTT ACGGACGTGA TGCTAGTCGT 
CATGTGAGGG TATAA 

 

Protein sequence

MERKPNKRLL NHYSAWKYIV LIVTIIVMLF SALPTFYGEN AAVQVGAKAG LTLTPVALRD 
KLQAEGVTVK RIDQKNGETL IVLDADNQQT LVKTLVSSMV TEPKELTLSF ASAAPSWLQN 
LGFQPIKLGL DLRGGVQFLL DVDVDPVYQT QGEALVDSLR QFIREQKIRG ASVYLDQTNQ 
LNLTLPDNDA RAAVRQMMKQ SYPNWQLSNT DGAGLQIKLS QEEQTKLRNL TVQQNLQVMR 
SRIEELGITE ALVQRQGDHR IRIELPGVQD PAAAKNVIGA TASLAFFEVK ESGSVNAMVL 
NDKSGKPIYV SRTPVLGGDH IVDARASLGE MGMAEVNINL DRIGGQKMSE FSRTNIGKPM 
ATSYSEYSRD ELGKAKQTQE IISVATIQSQ LGDRFRITGA GTYQEAQQLA LLLRAGSMTA 
PVTIVEERTI GPTLGAENIE NGFAALGLGM GITLLFMALW YRRLGWVANI ALISNMVILF 
GLLALIPGAV LTLPGIAGLV LTVGMAVDTN VLIFERIKDK LKEGRSFALA IDTGFDSAFS 
TIFDANFTTM ITAVVLYSIG NGPIQGFALT LGLGLLTSMF TGIFASRALI NLVYGRDASR 
HVRV