Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_3180 |
Symbol | |
ID | 5369811 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | - |
Start bp | 3793290 |
End bp | 3796448 |
Gene Length | 3159 bp |
Protein Length | 1052 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640831433 |
Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
Protein accession | YP_001367373 |
Protein GI | 153001692 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTATCGC AGTTTTTTAT TAAAAGACCG ATATTTGCAG CCGTACTCTC ACTGCTGTTT TTTATCACAG GGGCGATTGC CGTTTGGCAA CTGCCGATCA CTGAATACCC TGAAGTTGTG CCGCCCACCG TCGTGGTGAC CGCTAACTAC CCTGGCGCTA ACCCTAAAGT GATTGCCGAA ACCGTGGCTT CACCGCTGGA GCAGGAAATC AACGGCGTCG AAGACATGTT GTACATGTCA TCGCAAGCGA CGTCCGATGG ACGCATGACC TTGACCATCA CCTTTGCCAT TGGCACTGAT GTGGACAGGG CGCAAACCCA AGTGCAGAGC CGAGTCGATC GCGCTATGCC GCGTCTGCCA CAGGAAGTGC AACGCTTAGG CATAGTCACC GAAAAGTCAT CGCCGGATCT CACCATGGTG GTGCATTTGC TGTCACCGGA TAACCGTTAT GACATGTTGT ATTTGTCTAA CTATGCGGCG CTGAACGTTA AAGATGAGCT CGCACGGATT AAAGGTGTGG GCGCGGTACG CTTGTTTGGC GCTGGGGAAT ACAGCCTGCG TATTTGGCTC GACCCGAATA AAGTCTCGGC TCTGGGTTTA TCACCTGCGG ACATTATTGC TGCCGTGCGT GAGCAAAACC AACAGGCGGC AGCGGGCAGT TTAGGTGCTC AACCCAGTGG TAGTGCTGAC TTCCAACTCT TAATTAACGT AAAAGGTCGT TTAACTGAAC TGTCTGAATT TGAAGATATC ATCATCAAAG TCGGTCAAAA CGGTGAAGTG AATCGTTTGA AGGATGTGGC TCGTATCGAG CTGGGTGCGA CAAGCTATGC GCTGCGCTCA CTGCTGGATA ACAAAGATGC AGTGGCGATT CCAGTGTTCC AAGCATCGGG TTCAAATGCG ATTCAGATTT CCGATGATGT GCGCGCCAAA ATGGCTGAAT TGTCTAAAGG ATTCCCCGAA GGATTAACGT ACGAAATCGT TTACGACCCA ACCGTGTTCG TGCGCGGCTC GATTGAGGCG GTGATGAAAA CCTTGCTTGA AGCCGTGTTG CTGGTGGTGT TAGTGGTAGT GCTGTTCTTG CAAACCTGGC GCGCCTCGAT TATTCCGCTG GTGGCTGTGC CTGTATCGTT AGTTGGTACC TTTGCCTTTA TGCATTTGCT CGGCTTCTCG CTTAACGCAC TGTCGCTGTT TGGACTCGTG CTCGCCATCG GGATTGTGGT GGATGATGCA ATTGTGGTGG TCGAAAACGT CGAGCGTAAT ATTGCCGCTG GTTTAAGCCC TGTTGCGGCA ACGCAAAAGG CGATGAAAGA AGTGACTGGC CCTATTGTGG CAACCACCTT AGTGCTGGCG GCGGTGTTTA TTCCTACGGC GTTTATGAGT GGTTTAACCG GGCAGTTTTA TAAACAGTTT GCCTTGACTA TCACTATTTC GACCTTTATC TCGGCGATTA ACTCACTCAC TTTGAGTCCA GCATTGTCCG CGTTATTGCT CAAGAGCCAT GATGCGCCGA AGGATGGTTT AACCCGTCTA ATGGACAAGT TGCTCGGTGG TTGGTTGTTC ACGCCTTTTA ACCGCTTATT TAGCCGTGCA TCCGATGGCT ATGGTTGGTT AGTGCGTAAA GTGATCCGTT TTGGCGGCAT TATCGGCCTA GTGTATTTAG GCATGGTAGC GCTAACGGGC GTGCAATTTG CTCATACACC AACGGGTTAT GTACCGGGTC AAGATAAACA GTATTTAGTG GCGTTTGCTC AGTTGCCCGA TGCGGCATCC CTTGAACGTA CCGATACCGT TATCAAAAAG ATGTCTGAGA TTGCCCTTAA TCACCCAGGT GTGGCGCACT CGATTGCCTT CCCAGGCCTT AGCATCAACG GTTTTACTAA TAGTCCTAAT TCAGGCGTTG TGTTTGTCGC GCTTGATGAT TTTGAATTGC GTAAGAGTCC TGAGCTGTCG GCGAATGCCA TTGCTGGACA ATTGAATAAA GAGTTTGCTG GAATTCAAGA CGCATTTATT GCCATCTTCC CGCCGCCACC TGTGCAAGGC CTCGGCACTA TAGGAGGGTT CCGTCTGCAA ATTCAAGACA GAGCCAACCT TGGTTATGAG GCCTTGTATC AGGTGACCCA ACAAGTGATG TACAAGGCGT GGGCCGATCC TCAATTAGCC GGAATTTTCT CTAGCTATCA GGTGAACGTG CCACAACTTG AACTGGATAT TGATCGAACT AAAGCGAAAC AGCAGGCAGT GTCGCTCGAT CAAATCTTCC AGACATTACA AACCTATATG GGCTCGACCT ATGTCAACGA TTTCAATCGT TTCGGTCGAA CCTATCAGGT GAATATGCAA GCCGATGAGG CGTTCCGTCA AAGCCCGCAG CAGATAAGTC AGCTGAAGGT GCCAAATCTG AATGGTGATA TGATCCCGTT AGGGTCGTTT ATCAACGTCA GCCAAAGCTC AGGCCCAGAC AGAGTGATGC ACTATAACGG CTTTACGACC GCTGAAATCA ACGGTGGCCC AGCAGCAGGT GTGAGTACTG GCCAAGCGCA GGCAGCGATT GAGAAAATCC TCGCCGAAAC GCTGCCAAAT GGTATGACCT ACGAATGGAC TGAGTTAACT TATCAGCAAA TCTTAGCAGG CAATACGGGC TTGTTAGTCT TCCCGCTGGT GATCTTGCTG GTGTTCATGG TGCTCGCTGC TCAGTATGAG AGCTTAAGCT TGCCATTGGC GATTATCTTA ATCATTCCAA TGACCTTGCT CTCAGCCCTC AGTGGAGTGT TAATTTACGG TGGTGACAAC AATATCTTCA CCCAAATTGG CCTGATAGTG CTGGTAGGAC TTGCGACTAA GAACGCTATC TTGATTGTCG AGTTCGCCAA GGAGAAACAA GATCACGGTA TGGCACCTAT GGATGCGATA TTAGAGGCAG CAAGATTACG TTTACGTCCT ATCTTGATGA CATCTATCGC CTTTATTATG GGAGTAGTGC CTATGGTATT CTCCACTGGC GCTGGCGCCG AGATGCGTCA AGCCATGGGC GTAGCAGTAT TCGCCGGCAT GATTGGGGTG ACTGTGTTTG GTCTAATCCT AACGCCATTG TTCTACTACG CACTGGCAAA GCGAGGCAGT AAAAAAGTCG AAGAGCATAA AGAACTAACC GTCAGTTAA
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Protein sequence | MLSQFFIKRP IFAAVLSLLF FITGAIAVWQ LPITEYPEVV PPTVVVTANY PGANPKVIAE TVASPLEQEI NGVEDMLYMS SQATSDGRMT LTITFAIGTD VDRAQTQVQS RVDRAMPRLP QEVQRLGIVT EKSSPDLTMV VHLLSPDNRY DMLYLSNYAA LNVKDELARI KGVGAVRLFG AGEYSLRIWL DPNKVSALGL SPADIIAAVR EQNQQAAAGS LGAQPSGSAD FQLLINVKGR LTELSEFEDI IIKVGQNGEV NRLKDVARIE LGATSYALRS LLDNKDAVAI PVFQASGSNA IQISDDVRAK MAELSKGFPE GLTYEIVYDP TVFVRGSIEA VMKTLLEAVL LVVLVVVLFL QTWRASIIPL VAVPVSLVGT FAFMHLLGFS LNALSLFGLV LAIGIVVDDA IVVVENVERN IAAGLSPVAA TQKAMKEVTG PIVATTLVLA AVFIPTAFMS GLTGQFYKQF ALTITISTFI SAINSLTLSP ALSALLLKSH DAPKDGLTRL MDKLLGGWLF TPFNRLFSRA SDGYGWLVRK VIRFGGIIGL VYLGMVALTG VQFAHTPTGY VPGQDKQYLV AFAQLPDAAS LERTDTVIKK MSEIALNHPG VAHSIAFPGL SINGFTNSPN SGVVFVALDD FELRKSPELS ANAIAGQLNK EFAGIQDAFI AIFPPPPVQG LGTIGGFRLQ IQDRANLGYE ALYQVTQQVM YKAWADPQLA GIFSSYQVNV PQLELDIDRT KAKQQAVSLD QIFQTLQTYM GSTYVNDFNR FGRTYQVNMQ ADEAFRQSPQ QISQLKVPNL NGDMIPLGSF INVSQSSGPD RVMHYNGFTT AEINGGPAAG VSTGQAQAAI EKILAETLPN GMTYEWTELT YQQILAGNTG LLVFPLVILL VFMVLAAQYE SLSLPLAIIL IIPMTLLSAL SGVLIYGGDN NIFTQIGLIV LVGLATKNAI LIVEFAKEKQ DHGMAPMDAI LEAARLRLRP ILMTSIAFIM GVVPMVFSTG AGAEMRQAMG VAVFAGMIGV TVFGLILTPL FYYALAKRGS KKVEEHKELT VS
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