| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3038 |
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| Symbol | |
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| ID | 5369509 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 3631786 |
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| End bp | 3632898 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640831280 |
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| Product | twitching motility protein |
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| Protein accession | YP_001367232 |
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| Protein GI | 153001551 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000184557 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGTTC TTCCGTTTTT AAAAGTGATC GTTGAGCGCA AAGCCTCCGA CTTGTTTATC
ACAGCTGGCT TTCCGCCGAG TGCCAAAATT GACGGTGAGT TGCGTCCCTT GGCCGAAAGT
GCCTTTACTC CGGCACAATC ACTGGATTTT GTTGAATCCT TAATGACCGA AGCGCAGAAA
CAAGAGTTTC ATTCGACTCG TGAGTGTAAC TTTGCTTTTG CGGCAAAGGA TTTAGGTCGT
TTTCGGGTGA GTGCATTTTG GCAGCGTGAA TCGCCAGGCT GCGTGATGCG CCGTATTGAG
ACTAAAATCC CTGACGTCGA TGATTTAAAA CTGCCCCCCA TTCTGAAAGA TCTGGTGATG
AGTAAACGTG GTCTCATTAT TATGGTGGGC GGAACGGGTA CGGGTAAGTC GACATCCCTA
GCGGCCTTGG TGGGGTATCG AAATGGTCAT GCTCGTGGTC ATATTCTCAC GATTGAAGAT
CCGGTCGAAT TTGTTCACGA CCACAGAAAA AGCATTATCA CCCAGCGTGA AGTGGGCATA
GATACTGAGT CTTTCGATGC AGCGCTAAAA AGCTCCCTTC GCCAAGCACC CGATGTGATC
TTGATTGGTG AAATTCGTAC CCAAGAGACG ATGGAGTTCG CCCTGTCGTT TGCGGAAACG
GGTCATCTCT GTATGGCAAC CTTGCATGCC AACAACGCCA ACCAAGCATT AGACCGCATT
ATGCACCTCG TGCCTGAGAG TAAACATCAG CAGTTATTGT TCGATTTGTC ATTGAATTTG
CGCGGTATTG TGGCGCAGCA ATTGATCCCA AAAGTCGATG GCACTGGGCG CCGCGCCGCG
ATTGAAGTAT TGATCAACAC CCCAAGGGTG GCGAGTTTAA TTGCGAAGAA CGAGCTGCAT
TTGCTCAAAG AAACCATGGC TAAATCGAAT GAGCAGGGCA TGCAGACGTT CGACCAAGCC
TTGCTCAAAC TTTATGTCGA TGGCGAGATT AGTTACGCCG ATGCGCTGCA CCATGCTGAT
TCACCGAACG ATTTACGTTT GATGATTAAA TTACAGAATA AAGAATCCAC GGGCTCAGGC
TTTATGGAAG GTGTCACCTT AGACATGGAC TAA
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| Protein sequence | MDVLPFLKVI VERKASDLFI TAGFPPSAKI DGELRPLAES AFTPAQSLDF VESLMTEAQK
QEFHSTRECN FAFAAKDLGR FRVSAFWQRE SPGCVMRRIE TKIPDVDDLK LPPILKDLVM
SKRGLIIMVG GTGTGKSTSL AALVGYRNGH ARGHILTIED PVEFVHDHRK SIITQREVGI
DTESFDAALK SSLRQAPDVI LIGEIRTQET MEFALSFAET GHLCMATLHA NNANQALDRI
MHLVPESKHQ QLLFDLSLNL RGIVAQQLIP KVDGTGRRAA IEVLINTPRV ASLIAKNELH
LLKETMAKSN EQGMQTFDQA LLKLYVDGEI SYADALHHAD SPNDLRLMIK LQNKESTGSG
FMEGVTLDMD
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