Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_2717 |
Symbol | |
ID | 5371491 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | - |
Start bp | 3255913 |
End bp | 3256788 |
Gene Length | 876 bp |
Protein Length | 291 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640830945 |
Product | pseudouridine synthase |
Protein accession | YP_001366914 |
Protein GI | 153001233 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.374808 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGTGAAA AATTGCAGAA AGTCTTGGCC CGTGCAGGCC ATGGCTCCCG TCGTGAGATG GAGGCATGGA TTGCTGCAGG CCGAGTTAGT ATTGATGGTG AAATTGCTAG CCTTGGGGAT CGGATTGAAG CCGATGCCAA AGTGCGTATC GATGGGAGAT CGATTTCGTT AAAGTCTGCC GAAGACGTGA TCTGTCGAGT ATTGGCATAC CATAAACCCG AAGGCGAAAT TTGTAGTCGT AAAGATCCTG AAGGCCGTCC AACGGTATTC GATCGCTTAC CTAAAGTGCG TGATTCACGC TGGGTTGCGG TAGGTCGTTT AGACATCAAC ACCTCAGGTT TATTACTGTT TACCTCAGAT GGTGAATTAG CGAACCGCTT AATGCATCCA TCAAACGAAG TCGACCGCGA ATACGCAGTG CGTACCTTCG GTGAAATCCC TGAAGCGACA GTGCAACGTT TACGTACCGG CGTGATGTTA GAAGACGGCC CTGCGCAGTT TGATAGCATC AAGCCAGCGG GCGGCGAAGG CATGAACCAG TGGTGGCATG TGTGTTTACG CGAAGGTCGT AACCGCGAAG TACGCCGTCT GTGGGAATCC CAAGAAGTGC AAGTGAGCCG TTTGATCCGT ATCCGTTACG GTATGGTTGA ATTGCCAAAA TCACTGCCAC GGGGTGGCTG GGTTGAATTG CCAATGGAGC AAGTTAACTA CTTGCGTAAA TTGGCAGGTT TAGAACCAGA AACCCGCACT ATGCTTGCTG CCGATAAACA CAGCGTAGCC CGTGCTCAGG TGAAGAGTGC TAAAATTCGC CGCGCCGTAC GTAAGCATAA AGTAACCGGT TCGGGAAAAC CTAAGCCATC GCGTCAGCGC AGCTAA
|
Protein sequence | MSEKLQKVLA RAGHGSRREM EAWIAAGRVS IDGEIASLGD RIEADAKVRI DGRSISLKSA EDVICRVLAY HKPEGEICSR KDPEGRPTVF DRLPKVRDSR WVAVGRLDIN TSGLLLFTSD GELANRLMHP SNEVDREYAV RTFGEIPEAT VQRLRTGVML EDGPAQFDSI KPAGGEGMNQ WWHVCLREGR NREVRRLWES QEVQVSRLIR IRYGMVELPK SLPRGGWVEL PMEQVNYLRK LAGLEPETRT MLAADKHSVA RAQVKSAKIR RAVRKHKVTG SGKPKPSRQR S
|
| |