| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2578 |
|---|
| Symbol | |
|---|
| ID | 5370138 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 3070816 |
|---|
| End bp | 3073050 |
|---|
| Gene Length | 2235 bp |
|---|
| Protein Length | 744 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640830790 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001366776 |
|---|
| Protein GI | 153001095 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTGCCATA ATCACAGACA GTTAACACAA GCAAATTTTC AAAGGGACTT TTCTTTGCAT
TTACCCGCCT TCCAAACCGC CCATCTCAGA CTGGCCATTA TTCTGGGGGT ATTCGGCTTA
GTCCTGAATC TTTTTCCCAT CCCTTTATTC GCTAATGTGC AATTGATTCT CGGCAACGTG
GCCGTGGTGA TAGTGGCAAT ACTCTTAGGG CCTTGGTATG CATTGATCAC CGCCCTATTT
ACCGCAACGG GGCTCATGAT CGTGTGGTCG AGCCCCCACG TGTATTTACT GTTTTTACTG
GAAGCATTAT GGCTTGGTTT TGCAAGGCGC CGAGACATTC AAATACTCTA TGCCAGTGTG
AGTTATTGGG TGTTATTGGG GATCCCGCTG TTAGCCATTT ATGTGGCAGT CATTGCTAAA
ATGCCCGCTA GCCACATTCC TTTTACCGCG ATCAAACAAG CAGTTAATGG CATGATTTAC
GCTGCAATTG GTGAACTCTG TGTGGTTGCT ATTCCAAGCC TATGGCATTT TAAAGGCAAG
CTGACCAATC TTAACCGGCG TACTTTTAGC TCGCAGCTCA GTTACTTGTT TACCTTAATT
ATTACTGTGA GCTTATTGGT CTCATCCTTA GCTTTTAATC ACTTTTTTAT TGATAAACAA
CAAGTGATGA TTAATCGCAA TCTGGACGAT ACAGCAACTC ATTTGAGCCA TGCAACCGAC
AACTACCTCG CTTACAACAC GCAAGTCATC GCTAGCACGG CCAAGTTTTT GAGTCTGTCG
AACGCTGGTA TCAATGAGTG GCAGGCATTA CTGTCGAGCG TACACGATAG TAATCAAGGC
TTTAAAACCA TGTTACTAGC TAATGAGCAA GGCAACTTAC TCGCTGCCAG TCCAATGGCC
AGTATAGTTG AGTTTGATCG CCTAGCAGAA ATCCCTTCTG TGATGGATAG GGAGTACTTT
ACCCAAGCGT TTTATAACCA TAAAACCTTT GTATCACCCG CGTTTATCGG CAGAGGTTTT
GGTAATGACG TAATCGTTGC CATCAGTGCC CCGATTTTTA GTCAAAATGA CCCCAATCAA
GCCAGAGGGA TAGTCGAAGG CAGCTTAGAT TTACGCTATT TTTCCAGCAT AGATAAACAA
AACCTGCACC ATGAGCAGCA ATCTATTTTA CTGACAGATG AGAACAATAA TCTGATTTAT
GCCTCCGAAG GGTTAGGACT AGCACCGCTC ACCCCCTTGT CATTCAGCAA AGGCAGTGAG
ATTTATCGCG CCCAGCTTCA ACTGATGAAC CTGCATAACC TAGATTCAAA TACTCCTGAG
TACATCTATG CCCAGCATAA GTTGAACAAT GGTTGGCAAC TCTATGTTTT AGAACCTTTT
GTGCCGCTTT TAAAACTGGC TGAACGCCAA TATGTCAACA CGGTAATTTT GCTGTTTTGC
TCCTTAGTCG GTGCCTTTTT TATTACTAAA GCCATCAGTA AGTTACTGAC CGAACCTCTG
TCGCTTTTAG CGCAGCATTT CGGTCCCGCT AAGCAAGAAA AAGCCAGTGA CGAGAAGTTT
GAGCATGATC TACTCGATAA AAGCACCCCT AAAGAAATCT ATAGCTTGTA TGAAAGTTTG
GCCTCGAACC AACAAGCCTT ACTCGAACAC CAACAAGAAC TTGAACAAAA AGTACAGCAG
CGCACCCAAG ATTTAGAAGC CGCAAATGTG AAATTAAAGG ATTTAGCCGA GCGCGATCCG
CTGACGAATC TCTATAATCG CCGCTATACC GAGCATCAAT TTCCACTTAT CCAACAGATG
TGCGAACGGG GTCAAGATGC CATGACGCTT GCCATATTGG ATTTAGACCA TTTTAAGCAA
ATCAATGATA CTTATGGCCA TTTGGGCGGC GACGAGTGTT TAAAAGTGGT TGCTGAACTC
TTAACCTCGC TCTTCAAGCG AGATATTGAT TTGATCTCGC GCTACGGCGG CGAAGAATTT
TTGCTGATTT TACCTATGTG TAATGCCTTG AAAGTCGAAG CACATCTCAA TGAGTTTAAA
CAGCAACTCG CAGGCACTGT GATCATCAAT CCGCAGGATC ATCGAAGCTT TAATGTCACC
GCGAGTATCG GCGCTGTGAT TGCCAATGCC ACCTATAGCG ACTCCTTAGA GTACTGGCTT
AAACAGGCCG ACAATAACTT GTATCTGGCA AAGGAACAGG GGCGTGATCG GGTTGTTTGC
AGCCTGATTG TTTAA
|
|---|
| Protein sequence | MCHNHRQLTQ ANFQRDFSLH LPAFQTAHLR LAIILGVFGL VLNLFPIPLF ANVQLILGNV
AVVIVAILLG PWYALITALF TATGLMIVWS SPHVYLLFLL EALWLGFARR RDIQILYASV
SYWVLLGIPL LAIYVAVIAK MPASHIPFTA IKQAVNGMIY AAIGELCVVA IPSLWHFKGK
LTNLNRRTFS SQLSYLFTLI ITVSLLVSSL AFNHFFIDKQ QVMINRNLDD TATHLSHATD
NYLAYNTQVI ASTAKFLSLS NAGINEWQAL LSSVHDSNQG FKTMLLANEQ GNLLAASPMA
SIVEFDRLAE IPSVMDREYF TQAFYNHKTF VSPAFIGRGF GNDVIVAISA PIFSQNDPNQ
ARGIVEGSLD LRYFSSIDKQ NLHHEQQSIL LTDENNNLIY ASEGLGLAPL TPLSFSKGSE
IYRAQLQLMN LHNLDSNTPE YIYAQHKLNN GWQLYVLEPF VPLLKLAERQ YVNTVILLFC
SLVGAFFITK AISKLLTEPL SLLAQHFGPA KQEKASDEKF EHDLLDKSTP KEIYSLYESL
ASNQQALLEH QQELEQKVQQ RTQDLEAANV KLKDLAERDP LTNLYNRRYT EHQFPLIQQM
CERGQDAMTL AILDLDHFKQ INDTYGHLGG DECLKVVAEL LTSLFKRDID LISRYGGEEF
LLILPMCNAL KVEAHLNEFK QQLAGTVIIN PQDHRSFNVT ASIGAVIANA TYSDSLEYWL
KQADNNLYLA KEQGRDRVVC SLIV
|
|---|
| |