| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1792 |
|---|
| Symbol | |
|---|
| ID | 5373569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 2154412 |
|---|
| End bp | 2154909 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640829995 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_001365998 |
|---|
| Protein GI | 153000317 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00168803 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAA ATAATTCGGA ACTTGGCACC GCCAGTGCCA CTCAACACGC CCAAGTAAAA
GCGCCTATCG ATGTGCAAGG CATTGTTAAA CGCGCGACTG AGCTTAACGA TTTCGGCCAT
TTACTTGAGC ACGTCCCCTA TGCCAAATTT ATTGGTATGA AGGTGGAACG TTTTGGTGAT
GAACTGATTT TTAAACTGCC TGCTAAGGAC GACAATATCG GTAATCCTGT GTTGCCAGCT
ATCCATGGCG GCGTCATTGC AGGTTTTATG GAGATGTCAG CGATAGTGCA GTTGATGGTC
TTTATGCAAA CAGCCAAAGT GCCTAAAGTG GTTGATTTTT CCATCGACTA TTTACGTGCA
GGACTGCATA AAGATAGCTT TGCTGAATGT CGTATTACCC GTCAGGGGCG AAGAGTAGCC
AACGTGAATA TCGATTGTTG GCAAACCAAT CGTAAGCAGC TCATCGCTAC GGCACGGGCG
CACTTTCTGA TTGATTAA
|
|---|
| Protein sequence | MSANNSELGT ASATQHAQVK APIDVQGIVK RATELNDFGH LLEHVPYAKF IGMKVERFGD
ELIFKLPAKD DNIGNPVLPA IHGGVIAGFM EMSAIVQLMV FMQTAKVPKV VDFSIDYLRA
GLHKDSFAEC RITRQGRRVA NVNIDCWQTN RKQLIATARA HFLID
|
|---|
| |