Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_1708 |
Symbol | |
ID | 5371888 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 2056903 |
End bp | 2057892 |
Gene Length | 990 bp |
Protein Length | 329 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640829904 |
Product | RluA family pseudouridine synthase |
Protein accession | YP_001365914 |
Protein GI | 153000233 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000000190104 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGGCCG TTATAATTAG ATGGCGCATC ATGAATATAG AATCCACCCC ACAACAGGTT CAGTTGATCA CGATTGATGA AGATCACTTC GAACAGCGTA TCGATAACTA CTTAATGACC AAGCTGAAGG GCGTGCCGAA AAGCATGATC TATCGCATTG TCCGCAAGGG CGAGGTTCGA GTGAATAAGA AACGCATCAA ACCCGAGTAC AAGTTGCAGA TTGGCGACAT AGTGCGTATT CCGCCTGTCC GAGTGGCAGA GCCAGATAAC CGTACTGCAC CATCGCCTAA CTTAAGCAAA GTCTCGCAAC TCGAAGACCG TATTTTGCAC GAAGACAATC ATTTGATCGT GCTGAATAAA CCTGCTGGCA TTGCTGTGCA TGGTGGTAGT GGTGTTGATT ACGGCGTGAT TGAAGCCCTG CGTTCACTGC GTCCTCAACA AAAGTTTTTA GAGCTAGTAC ATCGTCTCGA TAAAGATACT TCGGGTGTGT TGTTGGTGGC GAAAAAGCGT AGCGCGCTTA AACATCTGCA TGATCAGCTC AGATATAAAA AGATGCAGAA AGACTATTTG GCCTTAGTGA AAGGTGAATG GTCTGCTCAA GATAAAGCCG TTAAACAGCC TTTATTAAAA ATCACCCTTA AATCCGGTGA GCGCATAGTG CGTGTTAATG CGGAAGGTAA ACCTTCTGAA ACGCGCTTTA AAATTATGCA GCGTTACCAA GGTTGTACTC TCGTGAAGGC AAGCCCTGTC ACTGGACGTA CTCACCAAAT TCGGGTGCAT TGCCAATTTG CGGGTCATCC TATCGCCTGT GATGATAAGT ACAGCGAGCA AGGTTTTGAC GACAGCATGC GGTCATTAGG CTTAACTCGA CTCTTTTTAC ATGCGGCTGA GTTGATGTTC ATTCATCCTG AAAATGATGA AGTCATGCGG GTCTCTGCGC CTTTAGATGA AAACTTGTCG CAGTTATTGA ATAAGTTAAA GCGTGTGTAA
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Protein sequence | MAAVIIRWRI MNIESTPQQV QLITIDEDHF EQRIDNYLMT KLKGVPKSMI YRIVRKGEVR VNKKRIKPEY KLQIGDIVRI PPVRVAEPDN RTAPSPNLSK VSQLEDRILH EDNHLIVLNK PAGIAVHGGS GVDYGVIEAL RSLRPQQKFL ELVHRLDKDT SGVLLVAKKR SALKHLHDQL RYKKMQKDYL ALVKGEWSAQ DKAVKQPLLK ITLKSGERIV RVNAEGKPSE TRFKIMQRYQ GCTLVKASPV TGRTHQIRVH CQFAGHPIAC DDKYSEQGFD DSMRSLGLTR LFLHAAELMF IHPENDEVMR VSAPLDENLS QLLNKLKRV
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