Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_1639 |
Symbol | |
ID | 5369491 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 1984129 |
End bp | 1985274 |
Gene Length | 1146 bp |
Protein Length | 381 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640829837 |
Product | nuclease SbcCD, D subunit |
Protein accession | YP_001365847 |
Protein GI | 153000166 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0420] DNA repair exonuclease |
TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0728377 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTTA TCCACACCTC GGACTGGCAC ATAGGTCGTC AGTTACACAA TCAGTCATTA CTGGATGATC AAGCCTTTGT GCTCGAGCAA ATTATTGCCT TAGCAGATGA GCATAAGGTG GATGCTGTGA TTGTGGCGGG GGATATTTAT GACAGATCGA TTCCGCCAGC AAACGCGGTT GCGCTGTTAG ATGATGTGCT CAACCGCTTA GTACAAGATT TAGGCCTGCA AGTGATTATG ATTGCCGGTA ACCACGATGG CCACGAGCGC TTAGGGTTTG CGGCAAAACA AATGGCGACA AGCGGGTTAC ATATTATTGG GCCTTTGAGT GCTGACATTC CGCCTATTAC ATTGTCGAGT ACAAGTGGTG ATGTGGTTTT TTATCCCTTG CCTTACGCTG AACCTGCCAC AGTGCGGCAA GTGTTTGAGT GTGAGGCATC GAGCCACGAA ATGGCCATGG ATGTGTTGCT GGCAAAAGTG CGTCAGCACG ATAGCCAAGG CTTACCCAAA GTGGTGATCA GCCATTGCTT TTTGGATGGT GGCAGCGAAT CCGAATCAGA GCGGCCGCTC AGTATTGGTG GCGCCGATAA AATATCGCCA AAGCTCTTTA CTGAGTTTGA TTATGTCGCC CTTGGGCATT TACACGGACC GCAATACAAA GGCGCCGAGC ATGTGCGCTA CTCTGGCTCG ATTTTGAAGT ATTCCTTTAG CGAACAACAT CAACACAAGT CGGTGACCTT AGTCGAACTG GGCACGCAAA CGCCGATTGA TATCCGTTTA TTGCCGTTAA CGTCGATGCG TGATGTCCGC ATCTTAGAAG GGGAGTTAGA CACTTTACTC GCCCAAGGTA AAACGGATGC AAAGCGTGAG GATTACCTTA TGGTCAGGCT CCTCGATAAA CATGCCATTT TAGACGCTAT GGGCAAACTT AGGGCCGTCT ACCCTAATGT GCTGCATTTA GAGCGGACAG GCCTAATGGC GGGGCAGCAA CAGGTCGCTT TGAGCCGGGA TCATATCAAA AAAGGCGAGA TGGACATGTT CTGTGACTTT TTCTCCCAGG TGTCTGGCGA GTCATTGACG CAGGCACAGC AAGCCGTGAT GGATGACCTC CTGACTAAGC TACACAATGA GGAGCGCCAA GCATGA
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Protein sequence | MKFIHTSDWH IGRQLHNQSL LDDQAFVLEQ IIALADEHKV DAVIVAGDIY DRSIPPANAV ALLDDVLNRL VQDLGLQVIM IAGNHDGHER LGFAAKQMAT SGLHIIGPLS ADIPPITLSS TSGDVVFYPL PYAEPATVRQ VFECEASSHE MAMDVLLAKV RQHDSQGLPK VVISHCFLDG GSESESERPL SIGGADKISP KLFTEFDYVA LGHLHGPQYK GAEHVRYSGS ILKYSFSEQH QHKSVTLVEL GTQTPIDIRL LPLTSMRDVR ILEGELDTLL AQGKTDAKRE DYLMVRLLDK HAILDAMGKL RAVYPNVLHL ERTGLMAGQQ QVALSRDHIK KGEMDMFCDF FSQVSGESLT QAQQAVMDDL LTKLHNEERQ A
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