| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1573 |
|---|
| Symbol | |
|---|
| ID | 5373638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 1901351 |
|---|
| End bp | 1902592 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640829769 |
|---|
| Product | transcriptional regulator, CdaR |
|---|
| Protein accession | YP_001365783 |
|---|
| Protein GI | 153000102 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3835] Sugar diacid utilization regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATCTGC TTGATTCTGC CATCGCTAAA CAAATTGTGA GTCGTACAAT GAAAATCATT
GGCCACAATA TCAATGTGAT GAACGGCCAA GGGGTGATTT TAGGCTCAGG CGATCCTAAA
CGTATTGGTT CAACCCACGA AGGCGCGCTG CTGGCCATTG CCCAAAATCG CAATGTGGAG
ATAAGTCAAG AAGTGGCCTC TGGGCTACAT GGCGTTAAAC CTGGCATCAA TTTACCCTTG
CATTATCAAG GACAAATCAT AGGTGTTGTC GGCATTACTG GCGATCCAAG TGAGCTTACC
CATTACGGTG AATTACTCAA AATGACCGCC GAAATGATTG TCGAACAAGC CAACCTGCAG
GATAAATTGC AGTGGGAGAA TCGCCAGCGC GAAGAGTTTA TTTTGCAGTT GATCAAAGCT
GAAACCGACG ATGATGAGCA GTTGCACCGC TGGGCAAAAC AGTTAGAAAT TGATATCAGC
CTGCCACGGG TCGCGGCCAT TATTGAGATC AGCGAGAAAC ACACCCAAAA ACAACATTTA
AAGACTGACG CCAACTCATC GGCCTTGTAT TTAGCAGAGG CATCCACTCA GTCCGCCGAT
GAACGCAGCC CCAGAGTCAG CGAAACCCTC AAGCAAGTGC TGCATCTATT GCAAAATCCG
GATCGTGGTA ACTTGATTGC CATGACCTCA ATGTCGCAAT TGGTGATCCT AAAACCCGCT
TTTTTAGATG GAAAACAATG GGACCCTGAG CTTGAAAACC AGCGTATCGA TAAACTGTTG
CAGCGCTTAC CCGCCCAAAT GGATTTAAAC TTTAAAATTG CCTTAGGCCA CTTCTTCCCC
GAAAAAGGCG GTATCGCGCG CTCCTATCAA ACCGCGCAGG AAACCTTAGC CCTAGGTAAA
CAACGCAATG CTGAGAGTAA TAAATACCTG TTCGAAGATT ATTCCCTGCA AGTACTACTA
GCGGGACTTA AACATGACTG GCGTGGTCAG GCGCTAGCGT CACCCTATCA GCAACTCGCC
AAGGCCGATA AAAACGGCCA GTTACGCAAA ACCTTAGCCG CCTATATCAC CCACTTTGGT
GATGCGCAGC AATGTGCGAA TGCGCTGTTT ATACACCGCA ACACACTTAG ATATCGCCTA
GATAAAATTC AGCAAATCAC CCAAGCCGAT ATCCAATCCC TGCATGGATT ATTGAGTTTG
TATCTTGGAC AACTGCTTGA TACTTCGGCA ACCCCAAGAT AA
|
|---|
| Protein sequence | MYLLDSAIAK QIVSRTMKII GHNINVMNGQ GVILGSGDPK RIGSTHEGAL LAIAQNRNVE
ISQEVASGLH GVKPGINLPL HYQGQIIGVV GITGDPSELT HYGELLKMTA EMIVEQANLQ
DKLQWENRQR EEFILQLIKA ETDDDEQLHR WAKQLEIDIS LPRVAAIIEI SEKHTQKQHL
KTDANSSALY LAEASTQSAD ERSPRVSETL KQVLHLLQNP DRGNLIAMTS MSQLVILKPA
FLDGKQWDPE LENQRIDKLL QRLPAQMDLN FKIALGHFFP EKGGIARSYQ TAQETLALGK
QRNAESNKYL FEDYSLQVLL AGLKHDWRGQ ALASPYQQLA KADKNGQLRK TLAAYITHFG
DAQQCANALF IHRNTLRYRL DKIQQITQAD IQSLHGLLSL YLGQLLDTSA TPR
|
|---|
| |