| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1542 |
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| Symbol | |
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| ID | 5372089 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 1864322 |
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| End bp | 1866298 |
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| Gene Length | 1977 bp |
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| Protein Length | 658 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640829738 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001365752 |
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| Protein GI | 153000071 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.869304 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGATCA AGTCGAGTAT TAATCCGCCG GTATTTTATT CGTCGGTCTT TTTCATCATC
TTGATGGTGA TGATTTGTGC AGTATGGCCC ACAGAGGCTA ACACCGTTTT TAGATCAATA
CAGTCATGGA TAGAAGTGAA AGCCGGTTGG CTTTACATTC TGAGCGTGGC GTTTTTCCTG
ATTTTTATCA TCTTTGTCAT GGTCAGTCGC TTTGGCGATA TCAAACTTGG GCCAGATCAT
TCTGTGCCGG ATTACAGCTA TAAAAGCTGG ATTGCCATGT TGTTTTCGGC AGGTATGGGT
ATTGGCCTGA TGTTTTTTGG GGTCGCCGAA CCTGTGATGC ACTATCTGGC GCCGCCAGAT
GCTACACCTG AGAGTCTCGC CGCCGCAAAA GAGGCGATGA AGATTACTTT CTTCCATTGG
GGACTGCATG CTTGGGCGAT TTATGCCGTA GTGGCATTGA GTCTGGCCTA CTTCTCCTAT
CGTCATAAGT TACCGCTACT GCCACGAAGC GCCCTTTATC CCTTAATTGG TGAACGCATT
TATGGTCCTA TTGGCCATAT TGTCGATACC TTTGCCGTGC TCGGCACTAT GTTTGGGGTG
GCGACATCAC TGGGCTTTGG GGTGTTGCAG GTTAACTCGG GTCTGAGTTA TCTATTTGAA
GGTTTACCTA ATAACGCTGT AGTGCAAGTG TGCTTGATCA TCGGCATTAC CTTGCTCGCG
ACGCTGTCGG TGTTTTCTGG CCTCGACAAA GGCGTCAAAC GCTTAAGCGA ACTCAATCTT
GGCCTCGCGA TTATCTTATT GCTTATCGTC TTGATCTTGG GTCCTACAGT CATGCTGTTG
CAGGCTTTTG TGCAAAACAC TGGCAGTTAC TTAAGTGATT TGGTTGGCAA AACCTTTAAC
TTGTACGCCT ATCAACATAA GGAAGATTGG CTTGGCGGCT GGACATTGCT CTATTGGGGC
TGGTGGATTT CTTGGTCACC TTTTGTCGGT ACCTTTATTG CGCGTGTGAG CCGCGGTCGT
ACCATCCGTG AGTTTTTGAT TGGTGTGTTA TTTGTGCCAT CGGCGCTGAC CTTCCTGTGG
ATGACAGTGT TTGGTAACTC GGCGATTGAT TCGATTATGA ATCAAGGCGC GACTTACCTT
GCCGAGGCGG TGAATACCGA TGTGTCTGTG GCCTTATTTG TGTTTTTCGA GCACATGCCG
TTCCCGACCT TACTCTCAGG GATTGCGATT TGTTTAGTGG TGACCTTCTT TGTGACCTCG
TCGGATTCGG GGTCGTTAGT GATTGATAAT CTGACCTCGG GCGGCGATAA CAATGCGCCC
GTATGGCAGA GGATCTTCTG GGCCCTGTTG CAAGGGGTTG TGGCCTCGGT ATTGTTGTTG
GCTGGTGGTT TACAGGCGCT GCAAACGGCG GCTATCGCCA GTGCCATGCC GTTCCTCGTG
GTGATGTTAT TCATGTGTCT GGGATTATTT AAAGCCCTGA AGAATGACTG GCTTAAGATC
AACAGCGTGC AATTGCACAA TACCAGTGTG CAGTACGCCA AAACCAACAT GAGCTGGGAA
GAACGCATTG GCGTGCTCGT GTCGCATCCT ACCCATGAAG AAGCGCAAGT GTTCTTGAAT
AATGTTGCGA CGCCTGCTTT GTCTAAGGTG TGTCAACACT TTATGGCCAA AGGCATAGTG
GCCGATCTCG AATACTTAGA TGGCCGCGTA CGTTTGGTGA TCAGCAATGA GGTGAACTTG
CCCTTTGTTT ACGGAGTACG AACCCGTTGT TTTGACATCA CTAACCCGAT AGGGACTGAA
ATCGAGCAGG GCAATACCTT GTATTACCGC GCCGAAGTGT ATTTAGAACA AGGTGGTCAG
CATTACGATG TGATGGGGTA TACCGAAGAG CAAATCCTCG CGGATGTGGT GACTCAGTAT
GAAAAATACT TACACTACTT GCATCTGTCG AATGCCGATC ATGCCCACAT AAGCTAA
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| Protein sequence | MSIKSSINPP VFYSSVFFII LMVMICAVWP TEANTVFRSI QSWIEVKAGW LYILSVAFFL
IFIIFVMVSR FGDIKLGPDH SVPDYSYKSW IAMLFSAGMG IGLMFFGVAE PVMHYLAPPD
ATPESLAAAK EAMKITFFHW GLHAWAIYAV VALSLAYFSY RHKLPLLPRS ALYPLIGERI
YGPIGHIVDT FAVLGTMFGV ATSLGFGVLQ VNSGLSYLFE GLPNNAVVQV CLIIGITLLA
TLSVFSGLDK GVKRLSELNL GLAIILLLIV LILGPTVMLL QAFVQNTGSY LSDLVGKTFN
LYAYQHKEDW LGGWTLLYWG WWISWSPFVG TFIARVSRGR TIREFLIGVL FVPSALTFLW
MTVFGNSAID SIMNQGATYL AEAVNTDVSV ALFVFFEHMP FPTLLSGIAI CLVVTFFVTS
SDSGSLVIDN LTSGGDNNAP VWQRIFWALL QGVVASVLLL AGGLQALQTA AIASAMPFLV
VMLFMCLGLF KALKNDWLKI NSVQLHNTSV QYAKTNMSWE ERIGVLVSHP THEEAQVFLN
NVATPALSKV CQHFMAKGIV ADLEYLDGRV RLVISNEVNL PFVYGVRTRC FDITNPIGTE
IEQGNTLYYR AEVYLEQGGQ HYDVMGYTEE QILADVVTQY EKYLHYLHLS NADHAHIS
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