Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_1508 |
Symbol | |
ID | 5372712 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | - |
Start bp | 1821575 |
End bp | 1824844 |
Gene Length | 3270 bp |
Protein Length | 1089 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640829705 |
Product | transcriptional regulator, CadC |
Protein accession | YP_001365719 |
Protein GI | 153000038 |
COG category | [K] Transcription |
COG ID | [COG3710] DNA-binding winged-HTH domains |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.76281 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGACATCG TTATGAGTGA CAGCACATTT TTCTTTGGTG AATGGCAAAT CAATCCCAGC GCCAATAGTC TGCTCCTTGG CAAACAAGTC AAACAACTTG AGCCCAAGGC GATGGATGTG CTGTTGTTTC TCTGTCAACG GGCGGGTGAA GTCGTCAGCA GTGATGAAAT AGTCAGCCAC TGCTGGCCGG GCGTAGATAC TGGCGACAAT CCACTACACA AGATTATCAA TCAGTTACGT AGAGCATTAG GCGATAGCGC CACCGATCCC ACCTACATAG AAACCATACG CAAACGCGGC TATCGCACCT TAGCCGAAGT GCGTTTTCCT ATCGGCCACG AAGCCACCGC CAGCCCGCAA AGTTGGCAAG GCGGCTCGCC CTTTCCGGGT CTGCAAGCCT ATAGCGCTAA CTATGCCGAG GTGTTTTTTG GTCGCAGTGA ACAAATCAGC ACTTTGCTTA ACCGTATCAG CCAGCAAATC ATCTATGGTC GTGCCTTCTG TCTGGTTTTA GGCCCAAGTG GCAGCGGTAA ATCCTCCCTG ATAAATGCGG GTGTTGTGCC CAATTTAATG AAGGGCGGCG GCTATAACGG CATTGGTGTC GCGTCGTTCA GCAGCTTAGA TTTTGCCGAT GTGAGTAAAG GGCAACTGCT AACCGATCTT GCCAGCGCTA TGCTCGACTG GGAAATCAAC GACACGCCAG TGTTCGAAGG CATGAGCGCT GAGACACTGG CGGTTCAACT TGTCGAAGAT ATCCAAGGCG TAATCAACCA GTGCACCCAA GCTCTCAAGG TTCAGCCCTT TACTCAGCCG TTTTTTGCCT TGTTTATCGA CCGATTAGAA GTGTTGCTCT CATCACCGCT ATTTAGCGAC ACCGAGCGCA CAGTATTTGT TGAACTGCTG GAACAACTCG CCACCTCTAA GGCAGTGATT ATTATCAGTG CCTGTCGCAA CGATTTTTAT CCTTTACTTG TGGGCTACCC AAGCTTAATG GCCGGCAAAT CCCGCGGCGC CCACTTTGAC TTAGCGCCGC CGACACGCAC TGAACTGTTG CAAATGATCC GCTTGCCTGC GGTGGCCGCA AACTTAAGCT GGGAAGTTGA CAGCGAAACT GCGATGCCGC TCGATGAAAT GCTCTGCAGC GACGCAGCCA GTAACCCAGA TGCACTGCCC ATGTTACAAT ACACTCTGCA GGCCTTGTAT TTGCAGCGCA GCGCCGACGA TAAGTTATTA GTCTCGGTTT ATCATGCGCT TGGCGGTATT GAAGGGGCGA TTGGTAAAAA TGCCGAGCAA GCGATTTCCC ATTTAAGCGA TGCCGAAAAA GCCAGTCTGC CACGGATTTT ATCCCTGTTA GTCACCCTGC GCGAAGATGA AAAGTCCATC ACCAGCCGCA CCGCCCGCTG GTCGCAGCTG CAAAGCACCG CCGAAACCGC CCTAGTGCAA GCCATGGTCG ATAGCCGCTT ATTCGTGTCG CATCTGCAAA ATGGTGAACC CTGTTTTAGC ATCGCCCACG AAGCCCTGCT GCGCCGTTGG CCACGGGCGA CGGCTTGGAT TAGCGAACAT AGCGATAGTT TGAGCATTAA GAGTCGCCTA CAACATCTTT CAACACGCTG GCTCAGCGAA GCCAAACACA GCGCCTATCT ACTCGCTGAA GGTAAACCTT TAAAAGAGGC CCAAGGCCTC AGCCAAAATC CGTTATTCGA TTTAGACGAT CCCGAAACCG CCTTTATCAC AGCCTCCACC AAACGCGCCA ATATGCTGCG CTGGACGAGG CGCTTAACCG TCACCCTATT ATGCGTCCTC ACCCTCACTT CCATTATCAT GAGTGTGCGC AGCATAGAAG CTGAAAAACT CGCCCTGCAA AAACGCCTCG CCGCCGAAGA TTTGCTCGGT TTCATGGTGG GCGACTTCGC CGACAAGATG CGCGGCATCG GCCGCATGGA CTTACTCGAC GGGATCAGCA ATAAAGCACT GGAATATTTC AGTGATTTTT CCAATAAAGA GGATGATGCA CACTTAAGCT TCGACGCCCG CTTCCAACAC GGCCAAACCT TAGAGGCCAT GGGCGAAGTG GCATATTCGC GCAATAAAAT CGATGAAGCT CGCAGCGCAT TACTCGCGGC GCAAGAAAAA ATGCTGCCAC TTTTGAGTTT ACAGCCGGAA AACTTAGCCC TACTAAAAAC TCTAGGTGCC AATGCCTTTT GGTTAGGACA GCTTAAGTAT GATGTGAGTG ATTGGGCAGC ATCACGTCCC TTCTTCGAGC AATACTTAAA ATACAGCCAA ACGATGTACG CCCTTGCGCC CGAAGATAAA GATGCACTTA TGGAGCTGTC ATACGCCCAC AATACTTTGG GCTCTGTGTC TATGAAGCAG CAGGAATTTG CCAAAGCGCA GCAAGATTTT GAGGAATCAT TAAGGCTTAA ATTGCTCGCC TTAGCGAAAG CCCCCGAGGA TAGCCAGTTG ATTGCCGATG TGGCCGATAC CCGATCTTGG TTAGCCAGCG CTGCGGTTTC TCTTGGAGAT TTAAGTTACG CCGTACAAGC CCATCAAGAA ATCCAACAAC AGCTTGAAAG TCAAAATTTA GAAAAACAAC CTTATTTATT AGATAGGCTC GCAGGGAGCT ATCAGAATTT AGCAACTCTA CTAGCATATC AAGGGCATTT TTCTCAAGCA TCGTCAAAAG CAGAATCTGG ACTAGCTATT ATTATCGATG TTCTAAAACA GGATCCAGAA AATGAAAAGT GGAAGAGACT TAAATTTTAT TCATCATTTC AATCAATTGA ACTTTCAACT AGTACAGCAG CACCTAACGC ACAGGATAGG CTAATAAAGG TAAAATATGA ACTTGATTCC GATGAAAAAT TTAAGCTGTC ACCAAAATAT CAAGAAACTC TTGCAAAGTA TTATTACACT CAAGCAAAAT CATTTTTTGA GACGAAGAAT TACAAAAACG GCACAATCAA CATTAAACTC GCAGTCAAGT TGTACTACGA CTTATCAAAA TCATTTAAGC AGAATTATAT ATATTATTCA GATTTGAGTA TTGCAGAGCT TTTATATGCC TCATACCTAA AGAAATCTAA AAACTCTGAC GCTGTTATAG AATTATGCAA AAATACTAAA GAAAGACTTC AGCCTTTAGT TGAAAAAGAT AAAGACCCTA GATTTACAGT TCCTTACATA AGAGCATTAG ATTGTCTAGG TGAACTGAGT GATGAGAAAG AACTTGCTAA CTTATTAAAG TTAGCAGGGG TTAGTGATAT TAATTTTTAA
|
Protein sequence | MDIVMSDSTF FFGEWQINPS ANSLLLGKQV KQLEPKAMDV LLFLCQRAGE VVSSDEIVSH CWPGVDTGDN PLHKIINQLR RALGDSATDP TYIETIRKRG YRTLAEVRFP IGHEATASPQ SWQGGSPFPG LQAYSANYAE VFFGRSEQIS TLLNRISQQI IYGRAFCLVL GPSGSGKSSL INAGVVPNLM KGGGYNGIGV ASFSSLDFAD VSKGQLLTDL ASAMLDWEIN DTPVFEGMSA ETLAVQLVED IQGVINQCTQ ALKVQPFTQP FFALFIDRLE VLLSSPLFSD TERTVFVELL EQLATSKAVI IISACRNDFY PLLVGYPSLM AGKSRGAHFD LAPPTRTELL QMIRLPAVAA NLSWEVDSET AMPLDEMLCS DAASNPDALP MLQYTLQALY LQRSADDKLL VSVYHALGGI EGAIGKNAEQ AISHLSDAEK ASLPRILSLL VTLREDEKSI TSRTARWSQL QSTAETALVQ AMVDSRLFVS HLQNGEPCFS IAHEALLRRW PRATAWISEH SDSLSIKSRL QHLSTRWLSE AKHSAYLLAE GKPLKEAQGL SQNPLFDLDD PETAFITAST KRANMLRWTR RLTVTLLCVL TLTSIIMSVR SIEAEKLALQ KRLAAEDLLG FMVGDFADKM RGIGRMDLLD GISNKALEYF SDFSNKEDDA HLSFDARFQH GQTLEAMGEV AYSRNKIDEA RSALLAAQEK MLPLLSLQPE NLALLKTLGA NAFWLGQLKY DVSDWAASRP FFEQYLKYSQ TMYALAPEDK DALMELSYAH NTLGSVSMKQ QEFAKAQQDF EESLRLKLLA LAKAPEDSQL IADVADTRSW LASAAVSLGD LSYAVQAHQE IQQQLESQNL EKQPYLLDRL AGSYQNLATL LAYQGHFSQA SSKAESGLAI IIDVLKQDPE NEKWKRLKFY SSFQSIELST STAAPNAQDR LIKVKYELDS DEKFKLSPKY QETLAKYYYT QAKSFFETKN YKNGTINIKL AVKLYYDLSK SFKQNYIYYS DLSIAELLYA SYLKKSKNSD AVIELCKNTK ERLQPLVEKD KDPRFTVPYI RALDCLGELS DEKELANLLK LAGVSDINF
|
| |