Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_1255 |
Symbol | rimM |
ID | 5371833 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 1494927 |
End bp | 1495457 |
Gene Length | 531 bp |
Protein Length | 176 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640829454 |
Product | 16S rRNA-processing protein RimM |
Protein accession | YP_001365469 |
Protein GI | 152999788 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000000416795 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAGTA ACCAACAGCC AGTCGTACTG GGGAAATTAG GCTCCTGTCA TGGCATTAAA GGTTGGCTGA AAATCACCGC CTATACCGAT TCTGTTGAAG GTATCTTTGA CTACTCGCCT TGGCTTATTA AAGAAAATGG TGAGTGGCGC GAAATAAAGG TCACCCAGTG GCGTTATCAA GGCAAGGCCG TTGTTGCCTT ACTTGATGGC GTAGAAACAC GGGAGCAAGC GCAAATGCTC ACAAATTGTG AGATTGCGAT TTTGCCGGAA CAGATGAACG ATTTGCCAGC AGATGAGTTC TACTGGCGTG ATCTCATCGG TTGCGAAGTG GTCAATACAA CTGGTTATAA CATGGGGATT GTCGATCAGA TCGTGGAAAC AGGATCGAAC GACGTATTAC TCGTTAAAGC CAACGCTAAA GATAGTTTCG GCAAAGTGGA ACGTATGATC CCCTTTGTCC CTGAGCAGTT CATCAAAACG GTGGACCTGC AAGGTAAACA GATTTTAGTG GATTGGGATC CTGACTTCTA A
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Protein sequence | MSSNQQPVVL GKLGSCHGIK GWLKITAYTD SVEGIFDYSP WLIKENGEWR EIKVTQWRYQ GKAVVALLDG VETREQAQML TNCEIAILPE QMNDLPADEF YWRDLIGCEV VNTTGYNMGI VDQIVETGSN DVLLVKANAK DSFGKVERMI PFVPEQFIKT VDLQGKQILV DWDPDF
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