Gene Shew185_1245 details

Gene Information

• Locus tag: Shew185_1245
• Symbol: rnc
• ID: 5369934
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS185
• Kingdom: Bacteria
• Replicon accession: NC_009665
• Strand: +
• Start bp: 1486156
• End bp: 1486836
• Gene Length: 681 bp
• Protein Length: 226 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 640829444
• Product: ribonuclease III
• Protein accession: YP_001365459
• Protein GI: 152999778
• COG category: [K] Transcription
• COG ID: [COG0571] dsRNA-specific ribonuclease
• TIGRFAM ID: [TIGR02191] ribonuclease III, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.0000188917
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAACCGA TTAAAAATTT GCCACGTTTG TGTCGTACTT TAGGTTATGA GTTCAAGAAT 
ATTGAGCTGT TGACTCAAGC GCTGACCCAC AGAAGTGCGG CAAATAAACA CAATGAACGC 
TTAGAGTTTT TAGGTGATTC AATTTTATCT ATTGTGATTT CTGATGCCTT ATATCATCAG 
TTTCCGAAGG CAACCGAAGG CGATTTAAGC CGGATGCGCG CTACCTTAGT GCGCGGTGAT 
ACCTTAACGA TCATCGCCCA AGAATTTAAG CTCGGCGATT ATTTATATCT TGGTCCTGGT 
GAATTAAAAA GTGGCGGATT TAGACGCGAG TCGATTCTTG CCGATGCGGT TGAAGCCATT 
ATTGGCGCCG TCTACCTTGA TTCCGATCTC GAAGTTTGCC GTGCATTACT GCTGAAATGG 
TATGCCGAGC GTTTGGCCGA AATTCAACCC GGGATCAGCC AGAAAGACGC AAAAACCTTA 
CTGCAAGAAC ATTTACAAGG GTTTAAAAAA CCGCTGCCTG ATTACCAAGT AATCAACATA 
GAAGGCGATG CCCACGATCA GACATTTACC GTTGAATGTC GTATTGAAGA CTTGAGCCAA 
AGCGTCATTG GTGTGGCGAG TTCACGCCGT AAAGCCGAGC AAATCGCGGC CGCTCAAGTA 
TTGGAGTTAC TAAAGAAATG A 

 

Protein sequence

MEPIKNLPRL CRTLGYEFKN IELLTQALTH RSAANKHNER LEFLGDSILS IVISDALYHQ 
FPKATEGDLS RMRATLVRGD TLTIIAQEFK LGDYLYLGPG ELKSGGFRRE SILADAVEAI 
IGAVYLDSDL EVCRALLLKW YAERLAEIQP GISQKDAKTL LQEHLQGFKK PLPDYQVINI 
EGDAHDQTFT VECRIEDLSQ SVIGVASSRR KAEQIAAAQV LELLKK