| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1223 |
|---|
| Symbol | |
|---|
| ID | 5370147 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 1464527 |
|---|
| End bp | 1465456 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640829422 |
|---|
| Product | putative radical SAM protein |
|---|
| Protein accession | YP_001365437 |
|---|
| Protein GI | 152999756 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1242] Predicted Fe-S oxidoreductase |
|---|
| TIGRFAM ID | [TIGR01212] radical SAM protein, TIGR01212 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.784754 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCTTG ATGCATATGT GAACACCTTT GGTGCCGTTT GCAAGGCGCG ATATGGTACG
CGACTGCGAA AACTCACCAT AGATGCCAAG TTTACTTGCC CCAACCGTGA TGGCACCTTG
GGGCGTGGAG GTTGTACTTT CTGCAATGTG GCCTCATTTA GCCACCAAAC TGCTGATGTG
CTGAGTATTA CCGAGCAGAT CGAACAGGGT AAGAGTCGTT ATCGTGAGGC TAAGCCTCAG
GCGCAAGCCG ATAAGTTTAT TGCGTATTTT CAGGCTTACA CGAGCACTTA TGATGAGTAT
CAGGTGTTAA TGGCTAAGTA CGATGAAGCC GTAAAAGATG GCGAGATAGT GGGTTTGTGT
GTAGGAACTC GCCCCGATTG TGTGCCAGAT AATGTACTGG ATTTACTGGC AAGTTATCAG
GCAAACGGTG TTGATGTGTG GTTAGAACTT GGGTTGCAAA CCGCTAAAGA TGAAACGCTG
CGCAAGATCA ATCGCGGCCA TGATTTCGCC TGTTATTGTG ACACAGTATC TAGGGCGAGA
GCTCGCGGTC TTAAGGTGTG CACTCATCTT ATTCTTGGCT TACCCGATGA AACCCATAGC
GATTATATGG TGACCTTAGC GGCGGTATTG CAGCAGGGCG TTGATGGCTT GAAGCTGCAT
CCTTTGCATG TCGTCGAAGG CAGCACTATG GCCAAGGCGT GGCGAAGTGG GCGCTTACCT
TTACTGAGTC TTGAAGATTA TGCTCGCAGT GTCGGCGAGA TGATCCGCCA TACACCCGCG
GAAGTGATTT TCCACCGCGT CACCGCTTAT GCGAAAAAAC CTATGCTATT AGCACCAGAT
TGGTGTGCCT ATCGATGGGA TGGATTGGTG GCTATTGTGG ATAATTTACA GCTTTATGGT
GGACAAGGGC ACGTATTAGC GCAACGATAG
|
|---|
| Protein sequence | MGLDAYVNTF GAVCKARYGT RLRKLTIDAK FTCPNRDGTL GRGGCTFCNV ASFSHQTADV
LSITEQIEQG KSRYREAKPQ AQADKFIAYF QAYTSTYDEY QVLMAKYDEA VKDGEIVGLC
VGTRPDCVPD NVLDLLASYQ ANGVDVWLEL GLQTAKDETL RKINRGHDFA CYCDTVSRAR
ARGLKVCTHL ILGLPDETHS DYMVTLAAVL QQGVDGLKLH PLHVVEGSTM AKAWRSGRLP
LLSLEDYARS VGEMIRHTPA EVIFHRVTAY AKKPMLLAPD WCAYRWDGLV AIVDNLQLYG
GQGHVLAQR
|
|---|
| |