Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_1155 |
Symbol | |
ID | 5370827 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 1377023 |
End bp | 1378264 |
Gene Length | 1242 bp |
Protein Length | 413 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640829354 |
Product | outer membrane porin |
Protein accession | YP_001365370 |
Protein GI | 152999689 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.864338 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGTTGA AAAGATCTTA CTTATCTTTG CTCGTGTTAT CCGCGCTAGC AATTCCAGCC GTAGCCGATA CCAGCATTGA CCAAATGTTT AGCCAAGGCA CTCTGAAAGG TGAGTTGCGT TTATTCGACT TTACCCGTGA TTTTGACGAC ACCACTAATA CCAAACACGA CACTTCGTTT GGTGGACTGT TTTATTACAA TACTGCAAAA GTAAACGGTA TTAGCTTTGG TACTAGTTTC GCTACTGCCA ATCCAATTTG GACCAATGAC TCTGATGATG TATATGGTCT GGTTGCCCGT GATGCTAACG GTAATCATGA TAGCGTTAAT CGTTTACAAG AATATTTTGT ACAAGGTGAT TGGTGGGACA CTAAGTTCAA ACTTGGTGCC CAAGAACTGC GTACGCCTAT GATGAATCCC CATGATATTC GTGCTATTCC TCGAACTTTC CGCGGTTTTT CTGCGGAGAA CAAGAGTATT GATAATCTCA CTCTTTCTGC TCTCTATATT ACCGACTCCA TGGGGTGGTC GGATAACAGT TTTGTATCCG TAAAAGAAGC GGTGCAAAGT GAATTAGCAA GAGCAGGTGT AATTGCGGAT GTGGCGGATA ACCCTGTTTA TGCTTTAGGT GCCAAGTATC AGTTACCCTT TGAAACGGTT AAAACAGTCG TCAATCTTTG GCATTACCGC ATGGAAGATG TTTTTAATCA GACTTTCGCC AAAGTGAATT TATCGACTCA GTTAGGTGCA ACAAATGTGT ACTTAACGCC CTCATATCTG ACTCAACAAT CAATGGGCGA AGAAAGCGGT GGTTCACTCG ATACCTATCA ATATGGGTTT CATTTGGGGG CAAAATTTGC GGGTGCAGAC TTAACTTACA TCTATGCTAA AACTGGCGAT GATACCGTAC TCACTCCTTG GGGGGATGAA AAAGTGGTTA TTCAGCAAGT CAATCAATCT GCACGAGCCA ATGAAGAAGT TAACGCTTTA AAAGTAGCCT ATGACTTTGG AAAAATAGGT GTCAATGGAT TAGAAGCTTA CGCCTTTTAT GGTCAGTATG ATGTGCCAGA GGGCAATGCA AAGGATTTCG CTGAAACCAA CTTTTCAATC ACATATAAGT TTGATGGGGC CTTGTCAGGT TTGGGACTTA GAGCCCGTTA TGCGCTCGTT GATATTGACC AAGGTGAAGA CTTTGATGAT CTCCGTTTAT ATGTCACCTA TAAGTTTGTC TTAGGCAAAT AG
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Protein sequence | MMLKRSYLSL LVLSALAIPA VADTSIDQMF SQGTLKGELR LFDFTRDFDD TTNTKHDTSF GGLFYYNTAK VNGISFGTSF ATANPIWTND SDDVYGLVAR DANGNHDSVN RLQEYFVQGD WWDTKFKLGA QELRTPMMNP HDIRAIPRTF RGFSAENKSI DNLTLSALYI TDSMGWSDNS FVSVKEAVQS ELARAGVIAD VADNPVYALG AKYQLPFETV KTVVNLWHYR MEDVFNQTFA KVNLSTQLGA TNVYLTPSYL TQQSMGEESG GSLDTYQYGF HLGAKFAGAD LTYIYAKTGD DTVLTPWGDE KVVIQQVNQS ARANEEVNAL KVAYDFGKIG VNGLEAYAFY GQYDVPEGNA KDFAETNFSI TYKFDGALSG LGLRARYALV DIDQGEDFDD LRLYVTYKFV LGK
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