| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1143 |
|---|
| Symbol | |
|---|
| ID | 5369442 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 1360286 |
|---|
| End bp | 1363084 |
|---|
| Gene Length | 2799 bp |
|---|
| Protein Length | 932 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640829342 |
|---|
| Product | Beta-N-acetylhexosaminidase |
|---|
| Protein accession | YP_001365358 |
|---|
| Protein GI | 152999677 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3525] N-acetyl-beta-hexosaminidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000565131 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA CACTCTCAGC AAGCGCCATT TTACTGGCTT TAGGATTAGC GGCCTGTTCC
GAGGCGCCTG TGACGTCTTC CGCAGCGTCA GCCGATAAGG CTGTGGCTCA AACACAGCAA
GCTCAGGACG CATTAACTCA AGCGCAGTTA CAACAACTCG GGGATTCGTT AGTCGTAACT
TACCGTGTTG TGACCAATGT GCCAGACGAT AAGTGCCTAA AAGATAAAGC CGATGGTCGC
TGTTTTGTCG CTCAAATTGA TTTCGTGCCC GGTATGGATT TAGCCAGCCA GGATTGGGAA
ATTTATTTAA GCCAAATGCG CCCAGTGCAA TCGGTTGAAA GCGGTGAGTT GACGATAACG
CACGTTAAAG GCGATTTACA TCGTATTACG CCAACGGCTG CTTTTAAGGG ATTTGTTAAG
GGCGAGAAAA AGCAACTGAC ATTCCGTGGT GAGCCGTGGC AATTGGCTGA AACCGACGCT
ATGCCAAACT ATTACCTCGC AGCAAACGGA TTAGAACCCG TCATTATCGC CAGCACTCAA
GTGGGTAAAG ATGCCGAAAC GGGTTTAGAG ACGCGTCCGT ATGTTGAAGG GTTTACGAAT
TTTAAAACCC AATATCAACG CTCTGAAACG GATAAACTCG CGCCAGCCGA TGCCGCGCAA
TTATTTAAAG CTAATCAAAG CGTGAGTGAA GATGCCGCCT TAGCTGTGGA TGCCATTATC
CCAACGCCAC AAAAGGTGAA GATCCATTCA ACTGATACAC CAGTATCTCT TGCTGGTGGT
ATTAAGCTCG AATATCAGCA AGATAACCCA GAGCAAAAGC GTCAAGTTGC GGCAGCGGTG
GCACGTTTAG CTCGCCTGGG TGTGGCTGAA TCTGCGAGTG GCATTACGGT GAAATTTGCC
AGCCAAAAAG GGGATGAGGG CAGTTATCGC TTAGATATTC AGCCAACTGA AATTGTGATC
GCTGCCAATG ATGCGGCGGG CTTCTCTTAC GGTTTGTCAT CATTAGCAAG CCTTGTGGAT
GTGAATTCGC TGAAAGTGAA TGCCATGACC ATTGAAGACA GCCCACGTTA TTCGTTCCGT
GGTATGCACA TTGATGTGGC ACGTAATTTC CACAGCAAAC AATTGTTGCT GGATTTGCTC
GACCAAATGG CGGCTTATAA GCTCAATAAA CTGCATTTAC ACATGGCTGA CGATGAAGGT
TGGCGTTTAG AAATCGACGG GCTACCTGAG CTGACTGACA TCGGTAGTAA ACGTTGTCAT
GATTTAGATG AAAATACCTG CTTATTACCG CAGTTAGGCA GTGGACCGTT TGGCGATACA
AGCGTCAATG GCTATTACAC CAAACAAGAC TATATCGACA TAGTGAAATA TGCCGAGGCG
CGTCAAATTC AAGTGGTCCC ATCGATGGAT ATGCCGGGTC ATAGCCGCGC CGCGATTAAA
GCGATGGATG CGCGTTTTCG TCGATTACAG GCTGAAGACG TAGAGCTTAA AAACACGGGC
AAAGTGCAGG TTGTTCCTGT GCAGGAAACG GCAAATCAAG CTAGCACAGC GGTAAAAGCG
TTAGATGCGG GCGCTCGTCA ATTACAAGCT GAAGGGAAAA CCACTGCAGC TGAGCAATAT
TTGTTATCCG ATGCAAACGA CAAAACGGTT TATTCTTCAG TGCAGTATTA CGACGACAAC
ACGCTTAACG TGTGTATGGA GTCGACTTAT CACTTTGTCG ATAAAGTGAT TGATGAAATT
GCCAAGTTAC ACCAAGCCGC GGGTCAACCA TTGACGCGTT ACCACATTGG TGCCGATGAA
ACGGCGGGAG CTTGGAAACA ATCACCCCAG TGTTTAGCAT TTGTCGCCAA TAACGATAAA
GGTGTTAAGT CGATAGATGA CTTAGGCGCT TATTTTATTG AACGAATTTC GACTATGTTA
GCGGCAAAAG GCATTGAAGC TGCGGGGTGG AGCGATGGTA TGAGTCATGT TCGTCCTGAG
AATATGCCCG CTAAAGTGCA GTCTAATATT TGGGATGTGA TTGCCCATAA AGGTCATGAG
CGCGCCAATC AACAGGCGAA TCTTGGTTGG GAAACCGTGC TCTCTAATCC TGAGGTGCTG
TACTTTGACT TCCCCTATGA GGCCGATCCC AAGGAGCATG GCTATTACTG GGCGAGCCGC
GCGACCAACA GCCATAAAGT CTTTAGCTTT ATGCCAGATA ACTTGGCCGC CAATGCCGAG
CAATGGACCG ATATTCAAAA TCAGCCGTTC GAAGCGGACG ACAGAATAAA ACTTGATGAG
GCGGGTAACA AAGTCTCGGG CCCAAGGGAG AAAGGCAAAC CTTTTACTGG CTTGCAAGGG
CAGGTTTGGA GTGAGTCGAT TCGCAGTGAC GATACGATCG AATACATGGT GTTCCCGCGT
TTATTGATGT TGGCTGAGCG TGCTTGGCAT CAAGCTGCAT GGGAAGTGCC TTATCAATAT
CAAGGCGCTG TGTATAACCA AAGCTCGGGT GCTTTTACCT TAACCATGCG TGATGCACAG
GCAAAGGATT GGCAACAACT CGCGAATACT TTAGGCCACA AAGAGTTTAT TAAGTTAGAT
AAAGCGGGGA TTGATTATCG CGTACCGACG GTCGGCGCCG AGATCCGTGA AGGTAAACTG
TTTGCTAATA TCGCCTATCC CGGACTCAAA CTGGAATACC GAAGCCTAAA TGGCCAATGG
CAAGCTTATC AAGCGGGGCA GGCGGTCACT GCACCGATTG AGGTCCGTGC AATAGCTGCC
GATGGTATTC GTAAAGGCCG AAGTTTAATC GTTAACTAA
|
|---|
| Protein sequence | MKKTLSASAI LLALGLAACS EAPVTSSAAS ADKAVAQTQQ AQDALTQAQL QQLGDSLVVT
YRVVTNVPDD KCLKDKADGR CFVAQIDFVP GMDLASQDWE IYLSQMRPVQ SVESGELTIT
HVKGDLHRIT PTAAFKGFVK GEKKQLTFRG EPWQLAETDA MPNYYLAANG LEPVIIASTQ
VGKDAETGLE TRPYVEGFTN FKTQYQRSET DKLAPADAAQ LFKANQSVSE DAALAVDAII
PTPQKVKIHS TDTPVSLAGG IKLEYQQDNP EQKRQVAAAV ARLARLGVAE SASGITVKFA
SQKGDEGSYR LDIQPTEIVI AANDAAGFSY GLSSLASLVD VNSLKVNAMT IEDSPRYSFR
GMHIDVARNF HSKQLLLDLL DQMAAYKLNK LHLHMADDEG WRLEIDGLPE LTDIGSKRCH
DLDENTCLLP QLGSGPFGDT SVNGYYTKQD YIDIVKYAEA RQIQVVPSMD MPGHSRAAIK
AMDARFRRLQ AEDVELKNTG KVQVVPVQET ANQASTAVKA LDAGARQLQA EGKTTAAEQY
LLSDANDKTV YSSVQYYDDN TLNVCMESTY HFVDKVIDEI AKLHQAAGQP LTRYHIGADE
TAGAWKQSPQ CLAFVANNDK GVKSIDDLGA YFIERISTML AAKGIEAAGW SDGMSHVRPE
NMPAKVQSNI WDVIAHKGHE RANQQANLGW ETVLSNPEVL YFDFPYEADP KEHGYYWASR
ATNSHKVFSF MPDNLAANAE QWTDIQNQPF EADDRIKLDE AGNKVSGPRE KGKPFTGLQG
QVWSESIRSD DTIEYMVFPR LLMLAERAWH QAAWEVPYQY QGAVYNQSSG AFTLTMRDAQ
AKDWQQLANT LGHKEFIKLD KAGIDYRVPT VGAEIREGKL FANIAYPGLK LEYRSLNGQW
QAYQAGQAVT APIEVRAIAA DGIRKGRSLI VN
|
|---|
| |