Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_1085 |
Symbol | |
ID | 5370864 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | - |
Start bp | 1283224 |
End bp | 1283985 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640829281 |
Product | putative lipoprotein |
Protein accession | YP_001365300 |
Protein GI | 152999619 |
COG category | [R] General function prediction only |
COG ID | [COG4105] DNA uptake lipoprotein |
TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000000446586 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTATAAAT TTTCCAAAGG CGTTACCTTA GTCCTATTTT CACTAGCGTT ATCAGCCTGT AGCAGCAGCC CTGATGATAA CGATATTGCC GCCAAAACGT CACCTGATGT GCTTTACACT CAGGCAAGAA CCTCTATGGA ACTTGGCAAT TACTCTAAAG CTGTCCGTTC TTTGGAGGCG TTAGACTCAC GCTTCCCCTT CGGACCTCAC AAAACTCAAG TCCAGTTAGA CCTGATTTAT GCTTACTACA AAATGGACGA TGTCGCTTCG GGGATTGCGA ACATAGACAG ATTTATCCGT CTTAATCCTA CCCACCCTGA TATTGACTAT GTGTTCTATA TGCGCGGTTT AGTGAACATG CAAGCCGACA ACTATTTGTT CCACGATATG CTTAATATCG ACCGAACCGA TCGTGACCCT AAAAATGCTC AAGATGCTTT CAAAGATTTT GATCGTCTTA TCAAAACTTA CCCTAACAGC AAATATGCCG CCGATGCGCA AAAACGCATG TTAGCGTTGA AGAATCGCTT AGCAAGATAT TCAATCCAAG TTGCCGAATA TTATCTCAAG ATGAATGCAT GGAGCGCCGC AGCAATCCGA GCACAATCTG TAATGGAAAC ATATCCTGGC ACCCCTTCAA ATGAACGGGC ATTAGAGATA ATGATAGAAG CTTATGGCGA ATTAGGTCAG AGCAAGCTGA AGCAAAACGT GCTCATGGTA ATGCAAGCTA ACTATCCAAA CAATGAAATC TTATCAAACT AG
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Protein sequence | MYKFSKGVTL VLFSLALSAC SSSPDDNDIA AKTSPDVLYT QARTSMELGN YSKAVRSLEA LDSRFPFGPH KTQVQLDLIY AYYKMDDVAS GIANIDRFIR LNPTHPDIDY VFYMRGLVNM QADNYLFHDM LNIDRTDRDP KNAQDAFKDF DRLIKTYPNS KYAADAQKRM LALKNRLARY SIQVAEYYLK MNAWSAAAIR AQSVMETYPG TPSNERALEI MIEAYGELGQ SKLKQNVLMV MQANYPNNEI LSN
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