Gene Shew185_0829 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_0829 
Symbol 
ID5372320 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand- 
Start bp980067 
End bp980504 
Gene Length438 bp 
Protein Length145 aa 
Translation table11 
GC content47% 
IMG OID640829024 
Productmethylation site containing protein 
Protein accessionYP_001365046 
Protein GI152999365 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4970] Tfp pilus assembly protein FimT 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones57 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAAACC CATGGAATCA TGGATTTACC TTAGTTGAGC TTATGGTTAC CGTCGCGATT 
ATCGGTATTT TAGGCAGCTT AGCACTCCCT TCGTACCGCG ATGTTATGGC ACGTGAACAG 
CTAACCGCAG CCGCGAATGA ATTGGTCTCT AGCTATAAAT TTGCCCGCAG CGAAGCGATA 
AAACGCAGCA CTTCAATTAC CCTCACGGCA ACAGAAGCGG GACTTTGGGT CATTAAAGAT 
AGCGACGATA ACGAATTGAA GGTTTTTACG CCCCCGACAC GTGGGGTTGC TGTAACAGGA 
CTGGCTAGTA TCAGTATCAG TGCCACGGGC AATACAGCCA AAACCAGTAT TTCATTGGCG 
AACAGTCAAG GTGAAAACAT GAATTTATGC ATTTTACCGA GCGGCCAAAG TCAGCTTCAG 
AGCGGGGATT GTGCATGA
 
Protein sequence
MSNPWNHGFT LVELMVTVAI IGILGSLALP SYRDVMAREQ LTAAANELVS SYKFARSEAI 
KRSTSITLTA TEAGLWVIKD SDDNELKVFT PPTRGVAVTG LASISISATG NTAKTSISLA 
NSQGENMNLC ILPSGQSQLQ SGDCA