| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0686 |
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| Symbol | |
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| ID | 5371703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 829721 |
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| End bp | 831199 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640828880 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001364906 |
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| Protein GI | 152999225 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0296089 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCGT CACTCCAGCT CAAACTGGGT CAACAGTTAA CCATGACGCC ACAATTACAA
CAGGCCATCC GTCTGTTGCA ACTGTCGTCA TTAGAACTGC AGCAAGAGAT CCAGCAAGCC
TTAGATTCTA ATCCCCTTCT CGAGCTGGAA GAGGATCAAT TCGACGCCAC TAAAGACCCT
GTAAACCAAA CGCTATCCGA TACGGATTTC AGTGAATCTA GCACCCTACC GCCAGAAAAA
GACAGCTCCA CCATAGACAC GGCAGAGTCG CTCACGAAAG AGTCCATGCC CGACGAACTC
CCCATGGACA CCACATGGGA TGAAGTGTTC ACCGCCTCAC CCAATTCTGG CCCCGGCGGC
AGTCGTGAAG ACGATATGCC CTTCCAAGGT GAGACCAGTG AAGGCTTGTA TGAACACTTA
GAATGGCAAA AAAACCTCAC GCCGTTTTCT GAAACCGATT TAGCCATTGC CACCGCTATT
ATTGATGCCA TCGACGATCA AGGCTATCTC ACCCAAAGCA CTGACGAAAT CCTCGAAGCC
ATGGGCAATT CTGAGGTTGA GCTCGACGAA GTCGAAGCCG TACTAAAGCG CATTCAACAT
TTTGATCCCA TTGGTGTTGC CGCCCGCGAT TTAAGCGAGT GCCTGTTGAT CCAACTGTCG
CATTTTGCCG CTGACACGCC CAACCTAGAA AACGCCCGCA TGCTGATCAA AGATCATTTA
GATCTGATCG CCGCCCGCGA TTTTAGATTG TTGATGCGTA AGACTAAATT AAAAGAGGAT
GAATTAAGGG ACGGCATAGC GCTTATCCAA ACCCTCAATC CCCGCCCAGG TTTATTGATT
ACGCCCAACG ATGACGAATA CGTCATCCCA GATGTGTCAG TGTCGAAGAA AAATGGCCGC
TGGGTGGTTG AGCTGAATCC TGACTGCATG CCAAAAATCA ATGTAAACCA ACATTATGCC
TCGATGGCGC GCAGCACTAA AAGCCAAGCC GATAGCCAAT TTATTCGTGG TCATCTGCAA
GAGGCTAAAT GGTTTATCAA GAGTTTAGAG AGCCGTAATG ATACCCTGTT GAAGGTGGCG
AACTGTATCG TCCAATATCA GCAAGGTTTC TTTGAATACG GTGAAGAAGC CATGAAACCT
ATGGTGCTTA ACGATATTGC CGAAGCGGTA GAAATGCATG AGTCCACCAT CTCAAGGGTG
ACGACACAGA AATACATGCA TACCCCTAAG GGACTTTTTG AACTAAAATA CTTCTTCTCT
AGCCACGTCG GTACTGACGA TGGTGGGGAG TGCTCATCCA CAGCAATCAG AGCCTTCATT
AAGAAACTGG TTGCAGCGGA AAACCAGAAA AAACCATTAA GCGACAGTAA GATGGCACAG
CTTCTGGCAG AACAAGGGAT CAACGTAGCC CGCAGAACCA TAGCGAAGTA CCGAGAGGCT
ATGCTCATTC CGCCTTCTAA TCAGCGTAAA AGTTTATAA
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| Protein sequence | MKASLQLKLG QQLTMTPQLQ QAIRLLQLSS LELQQEIQQA LDSNPLLELE EDQFDATKDP
VNQTLSDTDF SESSTLPPEK DSSTIDTAES LTKESMPDEL PMDTTWDEVF TASPNSGPGG
SREDDMPFQG ETSEGLYEHL EWQKNLTPFS ETDLAIATAI IDAIDDQGYL TQSTDEILEA
MGNSEVELDE VEAVLKRIQH FDPIGVAARD LSECLLIQLS HFAADTPNLE NARMLIKDHL
DLIAARDFRL LMRKTKLKED ELRDGIALIQ TLNPRPGLLI TPNDDEYVIP DVSVSKKNGR
WVVELNPDCM PKINVNQHYA SMARSTKSQA DSQFIRGHLQ EAKWFIKSLE SRNDTLLKVA
NCIVQYQQGF FEYGEEAMKP MVLNDIAEAV EMHESTISRV TTQKYMHTPK GLFELKYFFS
SHVGTDDGGE CSSTAIRAFI KKLVAAENQK KPLSDSKMAQ LLAEQGINVA RRTIAKYREA
MLIPPSNQRK SL
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