| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0587 |
|---|
| Symbol | |
|---|
| ID | 5372007 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 693478 |
|---|
| End bp | 696420 |
|---|
| Gene Length | 2943 bp |
|---|
| Protein Length | 980 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640828786 |
|---|
| Product | Ig domain-containing protein |
|---|
| Protein accession | YP_001364812 |
|---|
| Protein GI | 152999131 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTACC CAGGCATCAA GTCGTACCAA GCGCTAACCG CCATTTACCT TGTGCTTTTA
CTTGCTTTGT TCGGGTGCGG CTCCGACTCC GACCAAGATG CCGCACCGAC TGTGACGTCC
ACAGCAACGA CCCTTGCGGC ATTAAATGGC ATAGAAGTTG TTCAGCCTGG TGTATTGGCT
GATATTGACT TAGTTAACTT GGTAAAGGCT AATGGCAAAG TCGTTATTAA AAATGTTTAC
ACCGAGCAGG TGCGCTGCCC AACACCGGAA GTGAGTGTGA GAGGGTTTAA TGTCTATCCA
CAATCAGGGG TAGCGTGTGA TTATCACTAC ACTGTTGAGG CTGGCTCATT ACAAGCATCG
GCTCGTGTCA CCGTGCTCGC CACTCGCGCA GAAAATCCGA TTATTCCGCC TTTATCGCAC
CCAATGTCAC TCGATAGTGC TGGCGTTGCC TTTGATTTTG ATTTAGTGCA GCTTCTGGGG
GCTGAATTTC CTAATGGTTA CAACCTGACC AGTGTAGAGA TGATGCCCGC ACAAAATGGT
GATGCAGGGC AGCAAGGGAG TGTTATTTTC AGTGGTAATA CCGTCACCTA TACTCCACCT
GCACGCATTG GTTTTGATGG TATCACCTAC ACCCTGCAGA AAGATGGTAA CCCCGAATTT
ACTGTTATTG GTTCTATCTA CATTACGATA TCGAACAGCC CTAACGAAGC ACCTGTTATT
GAGTTTCCCA ATTTTAGTTA TCAGCCTACC CCGGGTTTTA TCGCAAGGGC AGAATACAGT
ATTGACCTTG CGCAAGCGGG GATGACAATT AGTGTTGCCA ATGGCAAAGA ATACCATTTG
CAACACGTTC AGAGCCCTAC TGCAACGGTA AGCCCTTATG ACAATGCTGA CAACAATAAA
CGTATTAGGT TTCAAGCGGC AACCCCGGGT GAGCACCTAG TGAGTTATAT TGTGGCCGAT
GATTTTGGTG GTTTTACTAT GGGGTTTATT AAGGTTCAGG TTGATGCGGT ACTCAACCCC
GTAACTTGGA GTGACTTAGA GATTGAAGGT CGTACGTTTA CCGCCCCTGT ACTTTACACA
CCCCAGCTTA CTAACATGTT TAACGCTATA CCCGTCTGGG ATGACAGTGT GAACAACAAT
ACCATACCGG TAACGACAGT CACTTTGACA CCTCCCCCTA GTGGCGCAGC AACCGTGTTT
GGGAATACCC TTGCGGCATT TAGAAGTTAT TCAGCAGCTC AAGCTTACTG TGGCACTCGT
GGTGGGCGCC TGCCATCTTA CGATGAATCA CTCGTCATAG AAGGGTTGCA GGTCGGGGTT
GACGAGTTCG GGTTAATCAA CACTGCTCCA GGTTGGCCTA AGGGGAGGCC ATATGCACTA
ATGGTTAATG GTGCGGAGCC TGCGGGCTTT CCTTGGGAGC GAGGGGCGTA CGTCACTTGT
GTTAAACACA CCGCTATGGA GCTTGATTTA GTTGCCACTG AGTTTGAACG GTTCGCAAGA
GATTCAGGCG CGCTTTTGTC ACAAGAGCTT GGCACCTTAA CAACCGAGTT TCCCATGCAG
CAAATTACTC ACAAGATTAT TGGCGGCTCT CTCATGAATT ATCCGGAGTC GATAGTGATT
GAGCGTCTCA GTGACGGTAA TAGACTGCAC CGAATTACCG CACAGGCCTC GCGAAATGGG
TATGCTACAA TCCGTTTTTA TGACACAACA AACCCCAAAA ATTACATCGA TACACCCATG
TTGCGCTTTT TATCGATTGA CGTGCTCGAT ACGGATGGTG GTAAATTACT GACTGGCTCA
CCATCTAAAC TAAATGTGGC TATCCTGCAG CGTGAATCGA CTAATACAAT CGTAACCGCT
GATGTCGATA GGCATGACAT TAACGCTGGA TTTATGTACG GAGCATTTGT GCTCAGTTCG
GGCCAAAAAG TATGCCAACT CTATAATGAT GTAACTCTTT ATGGTCGGTC GAATTGGGTC
ATGTCAACAT ACTCCGAACT TCGAAGCATT GCGGCTCACG ATGATATGAA GGCATTGGGT
TGGCCGACAG TGCAATATTA TAAGTCAGGT GACTCTTGCG CCCCTAATAA TCAACAACAT
TTTTATATCG ACGGACGAGG TAAGCTAGCT GGTAACGGTT GTTATGCGGC GGAATCATAT
TATTCATTTA TATCCTGCTC CTCAGACATA CCTGTGGATA ACGATAAATC AACCATAGCG
GTCATAATTA ATAATGCACT CGCAAACAAC ACCGAGACAA ATCAGGTGAG CGTTACCGTG
CGTGATGCTA GAAATGCGCT TGTATCTGGT GAAGAGGTTA GCTTTAGTGC CAGTAATGGT
GCCACCGTTG AAACCCCGAC GGTGCTCACC AATAGTAACG GTGTCGCCAT CGCCAGCATA
AAGAGTACCC AATCAGGCAT CTCAACGATT ACAGCCTCCT TCAATGGCAC CACTAAGACT
GTTTACGTGA CGTTTATTCT GGTTAATTGC CAGTCCTTAG GCCAGTCCTT AGAAGGTGCA
TGTATTGATA TCTTTGATGC TGATAATAAC GGTAAGTTAT TTACCAGCTC ACCATCAGTG
GCCTACCTAG ACAGCATTGG TGGCAGTGCA ACAGGTGATA CTTATGAAGA TGGATCTTTC
GGCCCAGCTG GTGTTTTCTA CTTATTCAAC TGGAATAGCG CAAATGCACT GTGCACTACC
TACATCACCA ATCGTGTCGG CGGACGAACT AACTGGCGTT TAGCGACAAG AGACGAGTTA
AAAGTGCAGC TGTTCGATAA ACACGGCACC ATGTATAGCG CCCGCGGTTG GCCGACCGGC
AGGTTCTATT GGTCGGTGAC ACCTGATGGT TCTGACTATT ACGACGTGTC CCTCTTCGTT
GATGAAGTCA TCAGCGGCCC TCCGTTCACC CTGAGCTACG CATCCTGCGT CTCAGAGCCT
TAA
|
|---|
| Protein sequence | MFYPGIKSYQ ALTAIYLVLL LALFGCGSDS DQDAAPTVTS TATTLAALNG IEVVQPGVLA
DIDLVNLVKA NGKVVIKNVY TEQVRCPTPE VSVRGFNVYP QSGVACDYHY TVEAGSLQAS
ARVTVLATRA ENPIIPPLSH PMSLDSAGVA FDFDLVQLLG AEFPNGYNLT SVEMMPAQNG
DAGQQGSVIF SGNTVTYTPP ARIGFDGITY TLQKDGNPEF TVIGSIYITI SNSPNEAPVI
EFPNFSYQPT PGFIARAEYS IDLAQAGMTI SVANGKEYHL QHVQSPTATV SPYDNADNNK
RIRFQAATPG EHLVSYIVAD DFGGFTMGFI KVQVDAVLNP VTWSDLEIEG RTFTAPVLYT
PQLTNMFNAI PVWDDSVNNN TIPVTTVTLT PPPSGAATVF GNTLAAFRSY SAAQAYCGTR
GGRLPSYDES LVIEGLQVGV DEFGLINTAP GWPKGRPYAL MVNGAEPAGF PWERGAYVTC
VKHTAMELDL VATEFERFAR DSGALLSQEL GTLTTEFPMQ QITHKIIGGS LMNYPESIVI
ERLSDGNRLH RITAQASRNG YATIRFYDTT NPKNYIDTPM LRFLSIDVLD TDGGKLLTGS
PSKLNVAILQ RESTNTIVTA DVDRHDINAG FMYGAFVLSS GQKVCQLYND VTLYGRSNWV
MSTYSELRSI AAHDDMKALG WPTVQYYKSG DSCAPNNQQH FYIDGRGKLA GNGCYAAESY
YSFISCSSDI PVDNDKSTIA VIINNALANN TETNQVSVTV RDARNALVSG EEVSFSASNG
ATVETPTVLT NSNGVAIASI KSTQSGISTI TASFNGTTKT VYVTFILVNC QSLGQSLEGA
CIDIFDADNN GKLFTSSPSV AYLDSIGGSA TGDTYEDGSF GPAGVFYLFN WNSANALCTT
YITNRVGGRT NWRLATRDEL KVQLFDKHGT MYSARGWPTG RFYWSVTPDG SDYYDVSLFV
DEVISGPPFT LSYASCVSEP
|
|---|
| |