| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0578 |
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| Symbol | |
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| ID | 5372779 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 681381 |
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| End bp | 684269 |
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| Gene Length | 2889 bp |
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| Protein Length | 962 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640828780 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001364806 |
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| Protein GI | 152999125 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGACCAA ACATGATTAA ATCACTGTTT AGTAAAACCC CGTCGGTTAA GGTGCTCGAT
AATCGAGGGC TAACCGTGAG CGACATAGCG TACCATCGTC ATCCGGATTT ACCGCAGGTG
ACGAACGAGC GTATTACCCG CTATCAGTAC GATGATTCTG GCTTGCTTGA GCAGAGTGCC
GATGCGCGCC TGCACGATGC TGGTCTTGTG AACGCTATCT ATCTTAGGGA CTTAACAGGT
AGCGTCTTGT GCACACAGAG CGTTGACTCT GGTATCACCA TAGCCCTTAA CGACGCCGCG
GGAAGGCCGC TTGTGATGGT CAGTAACATC AGCACCAATG ACGATGGTAC AGACGACAGA
AGTCAGGCGG TGACCCGCAC TTGGCAGTAT GAAGATGTCA CAAAGCTTGG TCGCCCGTTG
AGTGTCACAG AGCGGAGGAA CGGCGAAGCT GCACGTATTA CGGAGCGCTT TGTATATGCT
GACAATACAA GCGCAGAAAA AGCCCTCAAT CTTGCCGGCA TGTGCGTGAG CCATTACGAT
ACGGCGGGTT TGGTACAGAC AGATAGCATT GCTCTGAATG GGGTACCGCT CTCTGTTAGC
CGCCGCCTGA TAAAGGAAGC AGATAATCCT GACGTAATCA CAGACTGGCA AGGGGATAAC
ACTTCTGCGT GGAATAGACT GCTGGCAGCA GAGTCATTTA CTACCCTGAG CACGGCCGAC
GCCCATGGTG CAGTGCTCAG TACCACTGAT GCAAAAGGTC ACGTGCAGCG CGTGGAGTAC
AATGTTGCCG GCCTACTTTC AGGCAGTTGG CTGAGGGTGA AGGGCGGTGC TGAGCAGGTT
ATGGTCAAGT CACTGACATA CTCAGCTGCT GGGCAAAAGC TACGTGAGGA GCATGGTAAC
GGTGTGGTGA CGACCTACAC CTATGAGCCC CAGACGCAGC GTCTTATTGG CATTAAAACG
GAACGTCCAT CAGGTCATGC ATCTGGTGCA AAGGTGCTGC AAGACTTGCG CTACGAGTAT
GACCCTGTGG GTAACGTGCT CAATATCCAC AATGACGCCG AAGAAACCCG CTTTTGGCGC
AACCAGAAAG TGGTGCCAGA GAATACGTAT ACTTACGACA GCCTGTATCA GTTGGTCAGC
GCCACTGGGC GCGAGATGGC CAGTGCTGGA GCACAGGACA GTCACTTACC TCGGGCAACA
AGTCCCCTTT CGACAGATAA CGCTGCCTAC ACAAATTATA GCCGCACCTA CACCTACGAC
AGCGCAGGCA ACCTGATACA GATAAGCCAC AGTTCCCCGG CAATAAACAA CCGCTATACG
ACGGATATCA CCGTCAGCGA CCGCAGTAAC CGTGGTGTCT TAAGCACACT GACGAAAAGC
CCCTCAGAGG TTGATGCATT GTTCACTGCT GGCGGGCAGC AGAAACAGCT GCAGCTGGGT
CAGTCATTAA TTTGGACCCC GCGCAATGAG TTATTAAAGG TTACCCCTGT GGCGCGTGTC
GAAATGACAG ACGATAGCGA GAGTTACCGT TATGACGGAA GCAGCCAGCG TATCCTGAAG
GTCAGCACAC AGAAAACGAA TAACAGCATG CAGACACAGC GAGTTGTGTA TCTACCGGGA
GTCGAACTGC GTACGACAAC AAGCGGCAGT AAGGAAAAGG AAAGTTTACA GGTGATTAGT
GTGAGTGAAG CAGGCCGAGC CCAGGTACGC GTACTCCACT GGGCTGTGGG TAAGCCAGCA
GACCTTAGCA ACGACTCGGT GCGTTATAGT TATGACAATC TCACCGGCAG TAGCACGCTT
GAGCTGGACG CTGACGGAAA TCTCATCAGC ATGGAGGAGT ATTATCCTTA CGGGGGCACG
GCGGTATGGG CATCCCGCAG TGCGGTGGAG GCCGATTATA GGACAGTGCG GTACTCGGGC
AAGGAGCGTG ATGCGACGGG GCTGTACTAC TACGGTTACC GGTACTACCA GCCATGGGTG
GGCAGATGGC TCTCCTCAGA CCCTGCGGGC ACCATTGATG GATTGAATCT GTTTAGGATG
TGCAGCAATA ATCCGGTTAT GTTTGCTGAT AGTGATGGAT TGGTGGGAGA GCCAGTTGCT
GCTTATGGTT TTGGTACACG AATAAAACTG AAAGAAAACA TAACCACCTT GGGAGATATT
CCTATTACCA TCGATCAACT TAACAGAAAC TTAGGAATAA ACGACTTCCA TTATACTACA
CTTTCTACAG TAAAAGATAA CATTTCTTCG GGTAGCAAAA TAGAAGGTGC TTCTACAATT
GAAGGTAGGA TTCCTAAAAA AGAAGATAAT GCATTGTATC TAGACGTGGC CGCTGAGGTG
GCGTTAACTC AAAAATGGGC AAGGTTTTTG TTGCAGAATT TTAAAAAAAT CGATATGCAA
GAAAGGATTA CCTCTAAGCT GAATGCTTAC CGCAGTTTTT GGTCCTGGCT AACAGGTGGT
GCTAAAAAAA TAAATCAGTA CATACAAAAG AATACACGGA TTGAAAATCA GCTCGCTTAT
GAAATTAAGA ACAAAGATGC AGTTAATCTA CTTGAACAAT TTTCAAAATC CAAAGAACCA
TTATGTTTAA CAGATCCAGA TCAAAATGCA TTCCTCCACG ATATAGTAAC TAGAGACTTT
TTCAGGCAAA CAAGTAAATT AGGGCTAGAA TTTTTCATTC AAAGTAATAT AGATATACAT
TTCACACATC TTATTCCAAC TGAGGGTACT TTTTTTACTG ATAGTGAAGC GAATGAAAGA
CCATATAGAA AATTAGAGCA TAGAACGTCG GGCGACGCAG AAGCTATTAC CTTTTCAGAA
TACAGGCATG CACAGAAACT GATAAATAAC CGTGATAGTC CTACGCGTAT ATCTTTTAAA
AAGCTATAG
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| Protein sequence | MRPNMIKSLF SKTPSVKVLD NRGLTVSDIA YHRHPDLPQV TNERITRYQY DDSGLLEQSA
DARLHDAGLV NAIYLRDLTG SVLCTQSVDS GITIALNDAA GRPLVMVSNI STNDDGTDDR
SQAVTRTWQY EDVTKLGRPL SVTERRNGEA ARITERFVYA DNTSAEKALN LAGMCVSHYD
TAGLVQTDSI ALNGVPLSVS RRLIKEADNP DVITDWQGDN TSAWNRLLAA ESFTTLSTAD
AHGAVLSTTD AKGHVQRVEY NVAGLLSGSW LRVKGGAEQV MVKSLTYSAA GQKLREEHGN
GVVTTYTYEP QTQRLIGIKT ERPSGHASGA KVLQDLRYEY DPVGNVLNIH NDAEETRFWR
NQKVVPENTY TYDSLYQLVS ATGREMASAG AQDSHLPRAT SPLSTDNAAY TNYSRTYTYD
SAGNLIQISH SSPAINNRYT TDITVSDRSN RGVLSTLTKS PSEVDALFTA GGQQKQLQLG
QSLIWTPRNE LLKVTPVARV EMTDDSESYR YDGSSQRILK VSTQKTNNSM QTQRVVYLPG
VELRTTTSGS KEKESLQVIS VSEAGRAQVR VLHWAVGKPA DLSNDSVRYS YDNLTGSSTL
ELDADGNLIS MEEYYPYGGT AVWASRSAVE ADYRTVRYSG KERDATGLYY YGYRYYQPWV
GRWLSSDPAG TIDGLNLFRM CSNNPVMFAD SDGLVGEPVA AYGFGTRIKL KENITTLGDI
PITIDQLNRN LGINDFHYTT LSTVKDNISS GSKIEGASTI EGRIPKKEDN ALYLDVAAEV
ALTQKWARFL LQNFKKIDMQ ERITSKLNAY RSFWSWLTGG AKKINQYIQK NTRIENQLAY
EIKNKDAVNL LEQFSKSKEP LCLTDPDQNA FLHDIVTRDF FRQTSKLGLE FFIQSNIDIH
FTHLIPTEGT FFTDSEANER PYRKLEHRTS GDAEAITFSE YRHAQKLINN RDSPTRISFK
KL
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